miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 5' -59.2 NC_001798.1 + 22262 1.07 0.001929
Target:  5'- cCGCCCGCGCCGGGCGCUAAUGAGAUGc -3'
miRNA:   3'- -GCGGGCGCGGCCCGCGAUUACUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 32261 0.77 0.234386
Target:  5'- gCGUCCGCGUCcGGCGCUGggGAGAg- -3'
miRNA:   3'- -GCGGGCGCGGcCCGCGAUuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 34873 0.77 0.240011
Target:  5'- cCGCCCgGCGCCGGGCgGCUAcccGGGAc- -3'
miRNA:   3'- -GCGGG-CGCGGCCCG-CGAUua-CUCUac -5'
5519 5' -59.2 NC_001798.1 + 101799 0.75 0.302581
Target:  5'- gGCcuCCGCGCCGGGCGCcucggguUGGGGUa -3'
miRNA:   3'- gCG--GGCGCGGCCCGCGauu----ACUCUAc -5'
5519 5' -59.2 NC_001798.1 + 79180 0.74 0.323653
Target:  5'- cCGCCCuguGCGCCcGGCuGCggGAUGAGGUGg -3'
miRNA:   3'- -GCGGG---CGCGGcCCG-CGa-UUACUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 9662 0.73 0.376983
Target:  5'- gGCCgCGCGCggaGGGCGCggGAUGGGGg- -3'
miRNA:   3'- gCGG-GCGCGg--CCCGCGa-UUACUCUac -5'
5519 5' -59.2 NC_001798.1 + 151156 0.73 0.38507
Target:  5'- uCGUCCGUGCCGGGCcacgggGGGGUGg -3'
miRNA:   3'- -GCGGGCGCGGCCCGcgauuaCUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 55975 0.73 0.401583
Target:  5'- aGCCCGCGCCGGGgaggcCGCgggGGcGAGGg- -3'
miRNA:   3'- gCGGGCGCGGCCC-----GCGa--UUaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 146509 0.72 0.410007
Target:  5'- aCGcCCCGCGCCGGcCGCgGcgGAGAg- -3'
miRNA:   3'- -GC-GGGCGCGGCCcGCGaUuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 2994 0.72 0.410007
Target:  5'- gGCCCGCGggccCCGGGCGCg---GGGGc- -3'
miRNA:   3'- gCGGGCGC----GGCCCGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 52764 0.72 0.453718
Target:  5'- uCGcCCCGCGuccucggcgccCCGGGCGCccGUGAGcgGg -3'
miRNA:   3'- -GC-GGGCGC-----------GGCCCGCGauUACUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 3580 0.72 0.453718
Target:  5'- gGCCCGCGCCa--CGCUGccgGAGAUGa -3'
miRNA:   3'- gCGGGCGCGGcccGCGAUua-CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 150903 0.71 0.462761
Target:  5'- cCGCCCccGCGCCGGGgCGCUcuucGggGGGcgGg -3'
miRNA:   3'- -GCGGG--CGCGGCCC-GCGA----UuaCUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 131335 0.71 0.471899
Target:  5'- cCGCCCGCGCCccGGGCGCg--------- -3'
miRNA:   3'- -GCGGGCGCGG--CCCGCGauuacucuac -5'
5519 5' -59.2 NC_001798.1 + 125701 0.71 0.471899
Target:  5'- aGUCCGaCGUCGGGCGCgcgcgGGggcggcGAGAUGa -3'
miRNA:   3'- gCGGGC-GCGGCCCGCGa----UUa-----CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 85987 0.71 0.481126
Target:  5'- aGgCCGcCGCCgGGGCGCUGGcgcaggGGGGUGa -3'
miRNA:   3'- gCgGGC-GCGG-CCCGCGAUUa-----CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 59459 0.71 0.499838
Target:  5'- -cCCCGCGugcCCGGGCGC-GGUGAGGc- -3'
miRNA:   3'- gcGGGCGC---GGCCCGCGaUUACUCUac -5'
5519 5' -59.2 NC_001798.1 + 56407 0.7 0.546943
Target:  5'- gGuCCCGCGgCGGGgGCUGGUGGcugccguGGUGc -3'
miRNA:   3'- gC-GGGCGCgGCCCgCGAUUACU-------CUAC- -5'
5519 5' -59.2 NC_001798.1 + 129043 0.7 0.557722
Target:  5'- cCGCCC-CGgaUCGGGCGCUGGUG-GAg- -3'
miRNA:   3'- -GCGGGcGC--GGCCCGCGAUUACuCUac -5'
5519 5' -59.2 NC_001798.1 + 4195 0.7 0.567573
Target:  5'- cCGCCCGCGgCGuggucugcGGCGCUGGcGGGGg- -3'
miRNA:   3'- -GCGGGCGCgGC--------CCGCGAUUaCUCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.