miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 5' -59.2 NC_001798.1 + 81257 0.66 0.800461
Target:  5'- cCGCCCGCGacccgCGGGaccuuGCgggggGGGAUGg -3'
miRNA:   3'- -GCGGGCGCg----GCCCg----CGauua-CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 98861 0.66 0.755014
Target:  5'- uGCCCGCccccgaCGGGCGCcAcgGuGGUGc -3'
miRNA:   3'- gCGGGCGcg----GCCCGCGaUuaCuCUAC- -5'
5519 5' -59.2 NC_001798.1 + 75988 0.66 0.764345
Target:  5'- uGCCCGCcgccCCGGGCGCcgGcgGcAGGg- -3'
miRNA:   3'- gCGGGCGc---GGCCCGCGa-UuaC-UCUac -5'
5519 5' -59.2 NC_001798.1 + 24668 0.66 0.773564
Target:  5'- gCGgCCGUGCCGGG-GCUGGccGGAg- -3'
miRNA:   3'- -GCgGGCGCGGCCCgCGAUUacUCUac -5'
5519 5' -59.2 NC_001798.1 + 153033 0.66 0.773564
Target:  5'- gGCCCGCGCgGcGGCGCgcgguUGGc--- -3'
miRNA:   3'- gCGGGCGCGgC-CCGCGauu--ACUcuac -5'
5519 5' -59.2 NC_001798.1 + 3774 0.66 0.782662
Target:  5'- gCGCCCacacggGCGCCgGGGCGCcc--GAGGc- -3'
miRNA:   3'- -GCGGG------CGCGG-CCCGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 7712 0.66 0.782662
Target:  5'- uGCCCGCGgaccaCCGGGCcuuuuuucggacGgUGAUcGAGGUGu -3'
miRNA:   3'- gCGGGCGC-----GGCCCG------------CgAUUA-CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 113629 0.66 0.782662
Target:  5'- uCGCCUGCGCgGccGGCGCcgccAUGuGGGUGg -3'
miRNA:   3'- -GCGGGCGCGgC--CCGCGau--UAC-UCUAC- -5'
5519 5' -59.2 NC_001798.1 + 32789 0.66 0.788954
Target:  5'- gCGCCCGCGCCGGccggcgacgcccccGCggGCcAcgGGGAg- -3'
miRNA:   3'- -GCGGGCGCGGCC--------------CG--CGaUuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 40497 0.66 0.791631
Target:  5'- uGCCUGUGCUGGGC-CggggGAGGg- -3'
miRNA:   3'- gCGGGCGCGGCCCGcGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 152268 0.66 0.800461
Target:  5'- aGCUCGUGCCGGGCcgggGUUccAUGAGccGg -3'
miRNA:   3'- gCGGGCGCGGCCCG----CGAu-UACUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 71103 0.66 0.800461
Target:  5'- gCGUgCGCGCCcccgGGGaCGCUGAUGGc--- -3'
miRNA:   3'- -GCGgGCGCGG----CCC-GCGAUUACUcuac -5'
5519 5' -59.2 NC_001798.1 + 25602 0.66 0.79252
Target:  5'- gGgCCGCGCCGGGgGCgggccccccccgGAG-UGg -3'
miRNA:   3'- gCgGGCGCGGCCCgCGauua--------CUCuAC- -5'
5519 5' -59.2 NC_001798.1 + 33137 0.66 0.791631
Target:  5'- -cCCCGCGCagGGGgGCcgggGAUGGGggGg -3'
miRNA:   3'- gcGGGCGCGg-CCCgCGa---UUACUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 110526 0.66 0.791631
Target:  5'- gCGUCCGCGCUGGGgGUcguuAUGAu--- -3'
miRNA:   3'- -GCGGGCGCGGCCCgCGau--UACUcuac -5'
5519 5' -59.2 NC_001798.1 + 102638 0.66 0.791631
Target:  5'- -uCCCGuCGCCGGGCgGCg---GAGGg- -3'
miRNA:   3'- gcGGGC-GCGGCCCG-CGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 79444 0.66 0.791631
Target:  5'- aCGCCCGCGCCcGGGCcuCUucuucccccGAGGg- -3'
miRNA:   3'- -GCGGGCGCGG-CCCGc-GAuua------CUCUac -5'
5519 5' -59.2 NC_001798.1 + 91786 0.67 0.745578
Target:  5'- aCGCCCccugccgaugacGCGCgGGGCGUggggaccGUGGGcgGg -3'
miRNA:   3'- -GCGGG------------CGCGgCCCGCGau-----UACUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 148016 0.67 0.742729
Target:  5'- gCGCCCGUccccuuccucuaccGCgUGGGCGCgggcgggGGGGUGg -3'
miRNA:   3'- -GCGGGCG--------------CG-GCCCGCGauua---CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 17121 0.67 0.736047
Target:  5'- cCGCCCGCGagCGGuaguGCGC-GGUGAGGc- -3'
miRNA:   3'- -GCGGGCGCg-GCC----CGCGaUUACUCUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.