miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 5' -59.2 NC_001798.1 + 2994 0.72 0.410007
Target:  5'- gGCCCGCGggccCCGGGCGCg---GGGGc- -3'
miRNA:   3'- gCGGGCGC----GGCCCGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 3580 0.72 0.453718
Target:  5'- gGCCCGCGCCa--CGCUGccgGAGAUGa -3'
miRNA:   3'- gCGGGCGCGGcccGCGAUua-CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 3774 0.66 0.782662
Target:  5'- gCGCCCacacggGCGCCgGGGCGCcc--GAGGc- -3'
miRNA:   3'- -GCGGG------CGCGG-CCCGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 3814 0.69 0.607348
Target:  5'- gGCCCGCGCCuccuccgccucGGGCGCcccccaGAGGc- -3'
miRNA:   3'- gCGGGCGCGG-----------CCCGCGauua--CUCUac -5'
5519 5' -59.2 NC_001798.1 + 4195 0.7 0.567573
Target:  5'- cCGCCCGCGgCGuggucugcGGCGCUGGcGGGGg- -3'
miRNA:   3'- -GCGGGCGCgGC--------CCGCGAUUaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 4359 0.67 0.697145
Target:  5'- gCGCCggcggggggCGCGCCGgcGGCGgUGGUGGuGGUGg -3'
miRNA:   3'- -GCGG---------GCGCGGC--CCGCgAUUACU-CUAC- -5'
5519 5' -59.2 NC_001798.1 + 7712 0.66 0.782662
Target:  5'- uGCCCGCGgaccaCCGGGCcuuuuuucggacGgUGAUcGAGGUGu -3'
miRNA:   3'- gCGGGCGC-----GGCCCG------------CgAUUA-CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 9162 0.68 0.647402
Target:  5'- cCGCCCGCGCCGGGgGgcagggucuCUGGcGGGu-- -3'
miRNA:   3'- -GCGGGCGCGGCCCgC---------GAUUaCUCuac -5'
5519 5' -59.2 NC_001798.1 + 9662 0.73 0.376983
Target:  5'- gGCCgCGCGCggaGGGCGCggGAUGGGGg- -3'
miRNA:   3'- gCGG-GCGCGg--CCCGCGa-UUACUCUac -5'
5519 5' -59.2 NC_001798.1 + 9721 0.69 0.607348
Target:  5'- gGCUCGgGCU-GGCGCUGGggGAGGUGc -3'
miRNA:   3'- gCGGGCgCGGcCCGCGAUUa-CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 9767 0.67 0.697145
Target:  5'- gGUaCUGCGCCGcGGUGCUGAUGGucauGUGg -3'
miRNA:   3'- gCG-GGCGCGGC-CCGCGAUUACUc---UAC- -5'
5519 5' -59.2 NC_001798.1 + 17121 0.67 0.736047
Target:  5'- cCGCCCGCGagCGGuaguGCGC-GGUGAGGc- -3'
miRNA:   3'- -GCGGGCGCg-GCC----CGCGaUUACUCUac -5'
5519 5' -59.2 NC_001798.1 + 22262 1.07 0.001929
Target:  5'- cCGCCCGCGCCGGGCGCUAAUGAGAUGc -3'
miRNA:   3'- -GCGGGCGCGGCCCGCGAUUACUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 24668 0.66 0.773564
Target:  5'- gCGgCCGUGCCGGG-GCUGGccGGAg- -3'
miRNA:   3'- -GCgGGCGCGGCCCgCGAUUacUCUac -5'
5519 5' -59.2 NC_001798.1 + 25602 0.66 0.79252
Target:  5'- gGgCCGCGCCGGGgGCgggccccccccgGAG-UGg -3'
miRNA:   3'- gCgGGCGCGGCCCgCGauua--------CUCuAC- -5'
5519 5' -59.2 NC_001798.1 + 25730 0.67 0.72643
Target:  5'- gCGCCCccgacgucucgGCGCUGGGCGCgca-GGGcGUGc -3'
miRNA:   3'- -GCGGG-----------CGCGGCCCGCGauuaCUC-UAC- -5'
5519 5' -59.2 NC_001798.1 + 26518 0.69 0.627368
Target:  5'- uGgCCGCGgCGGGCgGCggcgugGAGGUGg -3'
miRNA:   3'- gCgGGCGCgGCCCG-CGauua--CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 27522 0.67 0.70697
Target:  5'- gCGCCCGCGggaaggcagccCCGcGGCGCgcgggGGGAg- -3'
miRNA:   3'- -GCGGGCGC-----------GGC-CCGCGauua-CUCUac -5'
5519 5' -59.2 NC_001798.1 + 29399 0.67 0.716735
Target:  5'- gGgCCGCGCCggcgGGGCGCcGggGGGAc- -3'
miRNA:   3'- gCgGGCGCGG----CCCGCGaUuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 29534 0.69 0.607348
Target:  5'- cCGCCCcCGCCGGGgCGCgcggcuauUGGGGg- -3'
miRNA:   3'- -GCGGGcGCGGCCC-GCGauu-----ACUCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.