miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 5' -59.2 NC_001798.1 + 154177 0.69 0.607348
Target:  5'- gGCCCGgaGCCGGaGCGCgucgGGGcgGg -3'
miRNA:   3'- gCGGGCg-CGGCC-CGCGauuaCUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 153033 0.66 0.773564
Target:  5'- gGCCCGCGCgGcGGCGCgcgguUGGc--- -3'
miRNA:   3'- gCGGGCGCGgC-CCGCGauu--ACUcuac -5'
5519 5' -59.2 NC_001798.1 + 152268 0.66 0.800461
Target:  5'- aGCUCGUGCCGGGCcgggGUUccAUGAGccGg -3'
miRNA:   3'- gCGGGCGCGGCCCG----CGAu-UACUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 151156 0.73 0.38507
Target:  5'- uCGUCCGUGCCGGGCcacgggGGGGUGg -3'
miRNA:   3'- -GCGGGCGCGGCCCGcgauuaCUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 150903 0.71 0.462761
Target:  5'- cCGCCCccGCGCCGGGgCGCUcuucGggGGGcgGg -3'
miRNA:   3'- -GCGGG--CGCGGCCC-GCGA----UuaCUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 148016 0.67 0.742729
Target:  5'- gCGCCCGUccccuuccucuaccGCgUGGGCGCgggcgggGGGGUGg -3'
miRNA:   3'- -GCGGGCG--------------CG-GCCCGCGauua---CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 147173 0.69 0.577467
Target:  5'- cCGCCCgGCGCCGGGCGgaAGg------ -3'
miRNA:   3'- -GCGGG-CGCGGCCCGCgaUUacucuac -5'
5519 5' -59.2 NC_001798.1 + 146509 0.72 0.410007
Target:  5'- aCGcCCCGCGCCGGcCGCgGcgGAGAg- -3'
miRNA:   3'- -GC-GGGCGCGGCCcGCGaUuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 141484 0.69 0.607348
Target:  5'- uCG-CCGCGCgGGGgGCUGAUGuccGUGg -3'
miRNA:   3'- -GCgGGCGCGgCCCgCGAUUACuc-UAC- -5'
5519 5' -59.2 NC_001798.1 + 140194 0.69 0.607348
Target:  5'- cCGCCUGCgGCC-GGUGCUGGUGuGcGUGg -3'
miRNA:   3'- -GCGGGCG-CGGcCCGCGAUUACuC-UAC- -5'
5519 5' -59.2 NC_001798.1 + 134995 0.67 0.736047
Target:  5'- gGCCCGCGgUGGGCGCca--GGGu-- -3'
miRNA:   3'- gCGGGCGCgGCCCGCGauuaCUCuac -5'
5519 5' -59.2 NC_001798.1 + 133755 0.67 0.70697
Target:  5'- gCGCCCGCGUgGgGGCGCUGc------- -3'
miRNA:   3'- -GCGGGCGCGgC-CCGCGAUuacucuac -5'
5519 5' -59.2 NC_001798.1 + 131335 0.71 0.471899
Target:  5'- cCGCCCGCGCCccGGGCGCg--------- -3'
miRNA:   3'- -GCGGGCGCGG--CCCGCGauuacucuac -5'
5519 5' -59.2 NC_001798.1 + 129295 0.69 0.627368
Target:  5'- gGCaCCGCG-CGGGCGCggagGAGGg- -3'
miRNA:   3'- gCG-GGCGCgGCCCGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 129043 0.7 0.557722
Target:  5'- cCGCCC-CGgaUCGGGCGCUGGUG-GAg- -3'
miRNA:   3'- -GCGGGcGC--GGCCCGCGAUUACuCUac -5'
5519 5' -59.2 NC_001798.1 + 125701 0.71 0.471899
Target:  5'- aGUCCGaCGUCGGGCGCgcgcgGGggcggcGAGAUGa -3'
miRNA:   3'- gCGGGC-GCGGCCCGCGa----UUa-----CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 113629 0.66 0.782662
Target:  5'- uCGCCUGCGCgGccGGCGCcgccAUGuGGGUGg -3'
miRNA:   3'- -GCGGGCGCGgC--CCGCGau--UAC-UCUAC- -5'
5519 5' -59.2 NC_001798.1 + 110526 0.66 0.791631
Target:  5'- gCGUCCGCGCUGGGgGUcguuAUGAu--- -3'
miRNA:   3'- -GCGGGCGCGGCCCgCGau--UACUcuac -5'
5519 5' -59.2 NC_001798.1 + 102638 0.66 0.791631
Target:  5'- -uCCCGuCGCCGGGCgGCg---GAGGg- -3'
miRNA:   3'- gcGGGC-GCGGCCCG-CGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 101799 0.75 0.302581
Target:  5'- gGCcuCCGCGCCGGGCGCcucggguUGGGGUa -3'
miRNA:   3'- gCG--GGCGCGGCCCGCGauu----ACUCUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.