miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 5' -59.2 NC_001798.1 + 98861 0.66 0.755014
Target:  5'- uGCCCGCccccgaCGGGCGCcAcgGuGGUGc -3'
miRNA:   3'- gCGGGCGcg----GCCCGCGaUuaCuCUAC- -5'
5519 5' -59.2 NC_001798.1 + 96934 0.68 0.677347
Target:  5'- cCGCCCGCGCgCGaGCGCUcuGUGuGcUGg -3'
miRNA:   3'- -GCGGGCGCG-GCcCGCGAu-UACuCuAC- -5'
5519 5' -59.2 NC_001798.1 + 96676 0.69 0.627368
Target:  5'- aCGgCCGCGCUGGaGCGCguccGGGAg- -3'
miRNA:   3'- -GCgGGCGCGGCC-CGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 96093 0.69 0.627368
Target:  5'- aGUCCGCGCgGGGCGCgccucUGAc--- -3'
miRNA:   3'- gCGGGCGCGgCCCGCGauu--ACUcuac -5'
5519 5' -59.2 NC_001798.1 + 93631 0.67 0.70697
Target:  5'- aGUCauCGUCGGGCGCcag-GAGAUGg -3'
miRNA:   3'- gCGGgcGCGGCCCGCGauuaCUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 93271 0.69 0.587398
Target:  5'- gGCCCGCGCCG-GCGCcgucGGGGc- -3'
miRNA:   3'- gCGGGCGCGGCcCGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 91786 0.67 0.745578
Target:  5'- aCGCCCccugccgaugacGCGCgGGGCGUggggaccGUGGGcgGg -3'
miRNA:   3'- -GCGGG------------CGCGgCCCGCGau-----UACUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 85987 0.71 0.481126
Target:  5'- aGgCCGcCGCCgGGGCGCUGGcgcaggGGGGUGa -3'
miRNA:   3'- gCgGGC-GCGG-CCCGCGAUUa-----CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 81257 0.66 0.800461
Target:  5'- cCGCCCGCGacccgCGGGaccuuGCgggggGGGAUGg -3'
miRNA:   3'- -GCGGGCGCg----GCCCg----CGauua-CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 79444 0.66 0.791631
Target:  5'- aCGCCCGCGCCcGGGCcuCUucuucccccGAGGg- -3'
miRNA:   3'- -GCGGGCGCGG-CCCGc-GAuua------CUCUac -5'
5519 5' -59.2 NC_001798.1 + 79180 0.74 0.323653
Target:  5'- cCGCCCuguGCGCCcGGCuGCggGAUGAGGUGg -3'
miRNA:   3'- -GCGGG---CGCGGcCCG-CGa-UUACUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 75988 0.66 0.764345
Target:  5'- uGCCCGCcgccCCGGGCGCcgGcgGcAGGg- -3'
miRNA:   3'- gCGGGCGc---GGCCCGCGa-UuaC-UCUac -5'
5519 5' -59.2 NC_001798.1 + 72154 0.69 0.597361
Target:  5'- gGCCgGCGUCGGGCccacGAUGcAGAUGg -3'
miRNA:   3'- gCGGgCGCGGCCCGcga-UUAC-UCUAC- -5'
5519 5' -59.2 NC_001798.1 + 71103 0.66 0.800461
Target:  5'- gCGUgCGCGCCcccgGGGaCGCUGAUGGc--- -3'
miRNA:   3'- -GCGgGCGCGG----CCC-GCGAUUACUcuac -5'
5519 5' -59.2 NC_001798.1 + 66869 0.67 0.736047
Target:  5'- uCGCCgggGCGCCGGG-GCU--UGGGAa- -3'
miRNA:   3'- -GCGGg--CGCGGCCCgCGAuuACUCUac -5'
5519 5' -59.2 NC_001798.1 + 59700 0.67 0.716735
Target:  5'- aCGCCCGUcuUCGGGCGCUu----GGUGg -3'
miRNA:   3'- -GCGGGCGc-GGCCCGCGAuuacuCUAC- -5'
5519 5' -59.2 NC_001798.1 + 59459 0.71 0.499838
Target:  5'- -cCCCGCGugcCCGGGCGC-GGUGAGGc- -3'
miRNA:   3'- gcGGGCGC---GGCCCGCGaUUACUCUac -5'
5519 5' -59.2 NC_001798.1 + 56407 0.7 0.546943
Target:  5'- gGuCCCGCGgCGGGgGCUGGUGGcugccguGGUGc -3'
miRNA:   3'- gC-GGGCGCgGCCCgCGAUUACU-------CUAC- -5'
5519 5' -59.2 NC_001798.1 + 55975 0.73 0.401583
Target:  5'- aGCCCGCGCCGGGgaggcCGCgggGGcGAGGg- -3'
miRNA:   3'- gCGGGCGCGGCCC-----GCGa--UUaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 52764 0.72 0.453718
Target:  5'- uCGcCCCGCGuccucggcgccCCGGGCGCccGUGAGcgGg -3'
miRNA:   3'- -GC-GGGCGC-----------GGCCCGCGauUACUCuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.