Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5519 | 5' | -59.2 | NC_001798.1 | + | 93631 | 0.67 | 0.70697 |
Target: 5'- aGUCauCGUCGGGCGCcag-GAGAUGg -3' miRNA: 3'- gCGGgcGCGGCCCGCGauuaCUCUAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 4359 | 0.67 | 0.697145 |
Target: 5'- gCGCCggcggggggCGCGCCGgcGGCGgUGGUGGuGGUGg -3' miRNA: 3'- -GCGG---------GCGCGGC--CCGCgAUUACU-CUAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 9767 | 0.67 | 0.697145 |
Target: 5'- gGUaCUGCGCCGcGGUGCUGAUGGucauGUGg -3' miRNA: 3'- gCG-GGCGCGGC-CCGCGAUUACUc---UAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 59700 | 0.67 | 0.716735 |
Target: 5'- aCGCCCGUcuUCGGGCGCUu----GGUGg -3' miRNA: 3'- -GCGGGCGc-GGCCCGCGAuuacuCUAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 31783 | 0.67 | 0.716735 |
Target: 5'- aCGCgCGCgggucgggaggGCCGGGCGCggaggGAGGa- -3' miRNA: 3'- -GCGgGCG-----------CGGCCCGCGauua-CUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 25730 | 0.67 | 0.72643 |
Target: 5'- gCGCCCccgacgucucgGCGCUGGGCGCgca-GGGcGUGc -3' miRNA: 3'- -GCGGG-----------CGCGGCCCGCGauuaCUC-UAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 66869 | 0.67 | 0.736047 |
Target: 5'- uCGCCgggGCGCCGGG-GCU--UGGGAa- -3' miRNA: 3'- -GCGGg--CGCGGCCCgCGAuuACUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 134995 | 0.67 | 0.736047 |
Target: 5'- gGCCCGCGgUGGGCGCca--GGGu-- -3' miRNA: 3'- gCGGGCGCgGCCCGCGauuaCUCuac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 17121 | 0.67 | 0.736047 |
Target: 5'- cCGCCCGCGagCGGuaguGCGC-GGUGAGGc- -3' miRNA: 3'- -GCGGGCGCg-GCC----CGCGaUUACUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 148016 | 0.67 | 0.742729 |
Target: 5'- gCGCCCGUccccuuccucuaccGCgUGGGCGCgggcgggGGGGUGg -3' miRNA: 3'- -GCGGGCG--------------CG-GCCCGCGauua---CUCUAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 91786 | 0.67 | 0.745578 |
Target: 5'- aCGCCCccugccgaugacGCGCgGGGCGUggggaccGUGGGcgGg -3' miRNA: 3'- -GCGGG------------CGCGgCCCGCGau-----UACUCuaC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 52079 | 0.67 | 0.745578 |
Target: 5'- cCGCCCGCuacGCgGGGCGC--AUGAcGUa -3' miRNA: 3'- -GCGGGCG---CGgCCCGCGauUACUcUAc -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 9162 | 0.68 | 0.647402 |
Target: 5'- cCGCCCGCGCCGGGgGgcagggucuCUGGcGGGu-- -3' miRNA: 3'- -GCGGGCGCGGCCCgC---------GAUUaCUCuac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 96934 | 0.68 | 0.677347 |
Target: 5'- cCGCCCGCGCgCGaGCGCUcuGUGuGcUGg -3' miRNA: 3'- -GCGGGCGCG-GCcCGCGAu-UACuCuAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 96676 | 0.69 | 0.627368 |
Target: 5'- aCGgCCGCGCUGGaGCGCguccGGGAg- -3' miRNA: 3'- -GCgGGCGCGGCC-CGCGauuaCUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 96093 | 0.69 | 0.627368 |
Target: 5'- aGUCCGCGCgGGGCGCgccucUGAc--- -3' miRNA: 3'- gCGGGCGCGgCCCGCGauu--ACUcuac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 26518 | 0.69 | 0.627368 |
Target: 5'- uGgCCGCGgCGGGCgGCggcgugGAGGUGg -3' miRNA: 3'- gCgGGCGCgGCCCG-CGauua--CUCUAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 39844 | 0.69 | 0.617353 |
Target: 5'- cCGCCgCGCuGCCGGGCgaggcgucgagGCUucgGGGGUGc -3' miRNA: 3'- -GCGG-GCG-CGGCCCG-----------CGAuuaCUCUAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 140194 | 0.69 | 0.607348 |
Target: 5'- cCGCCUGCgGCC-GGUGCUGGUGuGcGUGg -3' miRNA: 3'- -GCGGGCG-CGGcCCGCGAUUACuC-UAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 154177 | 0.69 | 0.607348 |
Target: 5'- gGCCCGgaGCCGGaGCGCgucgGGGcgGg -3' miRNA: 3'- gCGGGCg-CGGCC-CGCGauuaCUCuaC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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