Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5519 | 5' | -59.2 | NC_001798.1 | + | 52079 | 0.67 | 0.745578 |
Target: 5'- cCGCCCGCuacGCgGGGCGC--AUGAcGUa -3' miRNA: 3'- -GCGGGCG---CGgCCCGCGauUACUcUAc -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 40497 | 0.66 | 0.791631 |
Target: 5'- uGCCUGUGCUGGGC-CggggGAGGg- -3' miRNA: 3'- gCGGGCGCGGCCCGcGauuaCUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 39844 | 0.69 | 0.617353 |
Target: 5'- cCGCCgCGCuGCCGGGCgaggcgucgagGCUucgGGGGUGc -3' miRNA: 3'- -GCGG-GCG-CGGCCCG-----------CGAuuaCUCUAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 34873 | 0.77 | 0.240011 |
Target: 5'- cCGCCCgGCGCCGGGCgGCUAcccGGGAc- -3' miRNA: 3'- -GCGGG-CGCGGCCCG-CGAUua-CUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 33137 | 0.66 | 0.791631 |
Target: 5'- -cCCCGCGCagGGGgGCcgggGAUGGGggGg -3' miRNA: 3'- gcGGGCGCGg-CCCgCGa---UUACUCuaC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 32789 | 0.66 | 0.788954 |
Target: 5'- gCGCCCGCGCCGGccggcgacgcccccGCggGCcAcgGGGAg- -3' miRNA: 3'- -GCGGGCGCGGCC--------------CG--CGaUuaCUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 32261 | 0.77 | 0.234386 |
Target: 5'- gCGUCCGCGUCcGGCGCUGggGAGAg- -3' miRNA: 3'- -GCGGGCGCGGcCCGCGAUuaCUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 31783 | 0.67 | 0.716735 |
Target: 5'- aCGCgCGCgggucgggaggGCCGGGCGCggaggGAGGa- -3' miRNA: 3'- -GCGgGCG-----------CGGCCCGCGauua-CUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 31246 | 0.69 | 0.607348 |
Target: 5'- gCGCCC-CGUugCGGGCGggGGUGGGAUc -3' miRNA: 3'- -GCGGGcGCG--GCCCGCgaUUACUCUAc -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 29534 | 0.69 | 0.607348 |
Target: 5'- cCGCCCcCGCCGGGgCGCgcggcuauUGGGGg- -3' miRNA: 3'- -GCGGGcGCGGCCC-GCGauu-----ACUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 29399 | 0.67 | 0.716735 |
Target: 5'- gGgCCGCGCCggcgGGGCGCcGggGGGAc- -3' miRNA: 3'- gCgGGCGCGG----CCCGCGaUuaCUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 27522 | 0.67 | 0.70697 |
Target: 5'- gCGCCCGCGggaaggcagccCCGcGGCGCgcgggGGGAg- -3' miRNA: 3'- -GCGGGCGC-----------GGC-CCGCGauua-CUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 26518 | 0.69 | 0.627368 |
Target: 5'- uGgCCGCGgCGGGCgGCggcgugGAGGUGg -3' miRNA: 3'- gCgGGCGCgGCCCG-CGauua--CUCUAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 25730 | 0.67 | 0.72643 |
Target: 5'- gCGCCCccgacgucucgGCGCUGGGCGCgca-GGGcGUGc -3' miRNA: 3'- -GCGGG-----------CGCGGCCCGCGauuaCUC-UAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 25602 | 0.66 | 0.79252 |
Target: 5'- gGgCCGCGCCGGGgGCgggccccccccgGAG-UGg -3' miRNA: 3'- gCgGGCGCGGCCCgCGauua--------CUCuAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 24668 | 0.66 | 0.773564 |
Target: 5'- gCGgCCGUGCCGGG-GCUGGccGGAg- -3' miRNA: 3'- -GCgGGCGCGGCCCgCGAUUacUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 22262 | 1.07 | 0.001929 |
Target: 5'- cCGCCCGCGCCGGGCGCUAAUGAGAUGc -3' miRNA: 3'- -GCGGGCGCGGCCCGCGAUUACUCUAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 17121 | 0.67 | 0.736047 |
Target: 5'- cCGCCCGCGagCGGuaguGCGC-GGUGAGGc- -3' miRNA: 3'- -GCGGGCGCg-GCC----CGCGaUUACUCUac -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 9767 | 0.67 | 0.697145 |
Target: 5'- gGUaCUGCGCCGcGGUGCUGAUGGucauGUGg -3' miRNA: 3'- gCG-GGCGCGGC-CCGCGAUUACUc---UAC- -5' |
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5519 | 5' | -59.2 | NC_001798.1 | + | 9721 | 0.69 | 0.607348 |
Target: 5'- gGCUCGgGCU-GGCGCUGGggGAGGUGc -3' miRNA: 3'- gCGGGCgCGGcCCGCGAUUa-CUCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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