Results 61 - 69 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5519 | 5' | -59.2 | NC_001798.1 | + | 9662 | 0.73 | 0.376983 |
|
Target: 5'- gGCCgCGCGCggaGGGCGCggGAUGGGGg- -3' miRNA: 3'- gCGG-GCGCGg--CCCGCGa-UUACUCUac -5' |
|||||||
| 5519 | 5' | -59.2 | NC_001798.1 | + | 9162 | 0.68 | 0.647402 |
|
Target: 5'- cCGCCCGCGCCGGGgGgcagggucuCUGGcGGGu-- -3' miRNA: 3'- -GCGGGCGCGGCCCgC---------GAUUaCUCuac -5' |
|||||||
| 5519 | 5' | -59.2 | NC_001798.1 | + | 7712 | 0.66 | 0.782662 |
|
Target: 5'- uGCCCGCGgaccaCCGGGCcuuuuuucggacGgUGAUcGAGGUGu -3' miRNA: 3'- gCGGGCGC-----GGCCCG------------CgAUUA-CUCUAC- -5' |
|||||||
| 5519 | 5' | -59.2 | NC_001798.1 | + | 4359 | 0.67 | 0.697145 |
|
Target: 5'- gCGCCggcggggggCGCGCCGgcGGCGgUGGUGGuGGUGg -3' miRNA: 3'- -GCGG---------GCGCGGC--CCGCgAUUACU-CUAC- -5' |
|||||||
| 5519 | 5' | -59.2 | NC_001798.1 | + | 4195 | 0.7 | 0.567573 |
|
Target: 5'- cCGCCCGCGgCGuggucugcGGCGCUGGcGGGGg- -3' miRNA: 3'- -GCGGGCGCgGC--------CCGCGAUUaCUCUac -5' |
|||||||
| 5519 | 5' | -59.2 | NC_001798.1 | + | 3814 | 0.69 | 0.607348 |
|
Target: 5'- gGCCCGCGCCuccuccgccucGGGCGCcccccaGAGGc- -3' miRNA: 3'- gCGGGCGCGG-----------CCCGCGauua--CUCUac -5' |
|||||||
| 5519 | 5' | -59.2 | NC_001798.1 | + | 3774 | 0.66 | 0.782662 |
|
Target: 5'- gCGCCCacacggGCGCCgGGGCGCcc--GAGGc- -3' miRNA: 3'- -GCGGG------CGCGG-CCCGCGauuaCUCUac -5' |
|||||||
| 5519 | 5' | -59.2 | NC_001798.1 | + | 3580 | 0.72 | 0.453718 |
|
Target: 5'- gGCCCGCGCCa--CGCUGccgGAGAUGa -3' miRNA: 3'- gCGGGCGCGGcccGCGAUua-CUCUAC- -5' |
|||||||
| 5519 | 5' | -59.2 | NC_001798.1 | + | 2994 | 0.72 | 0.410007 |
|
Target: 5'- gGCCCGCGggccCCGGGCGCg---GGGGc- -3' miRNA: 3'- gCGGGCGC----GGCCCGCGauuaCUCUac -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home