miRNA display CGI


Results 61 - 80 of 477 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 3' -64.1 NC_001798.1 + 38920 0.66 0.566328
Target:  5'- aGCCuGCagaaAgGGGCGCaGGCGCGUGG-Cg -3'
miRNA:   3'- -CGG-CGg---UgCCUGCGcCUGCGCGCCcG- -5'
5520 3' -64.1 NC_001798.1 + 52416 0.66 0.566328
Target:  5'- cGCCGUgcUGGGCGCGGccguguACGCGCugcacacGGCc -3'
miRNA:   3'- -CGGCGguGCCUGCGCC------UGCGCGc------CCG- -5'
5520 3' -64.1 NC_001798.1 + 1749 0.66 0.566328
Target:  5'- cGCCGCCgGCcaGCGCacGGCGCacugcacgGCGGGCa -3'
miRNA:   3'- -CGGCGG-UGccUGCGc-CUGCG--------CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 68295 0.66 0.566328
Target:  5'- aCCGCUcgguGCGG-UGCaGACaGCGgGGGCu -3'
miRNA:   3'- cGGCGG----UGCCuGCGcCUG-CGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 79127 0.66 0.566328
Target:  5'- cGCCGagcgCGCGGAggcCGUGGAgGaGCuGGGCg -3'
miRNA:   3'- -CGGCg---GUGCCU---GCGCCUgCgCG-CCCG- -5'
5520 3' -64.1 NC_001798.1 + 97836 0.66 0.566328
Target:  5'- -gCGCC-CuGACgGCGG--GCGCGGGCa -3'
miRNA:   3'- cgGCGGuGcCUG-CGCCugCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 116788 0.66 0.565388
Target:  5'- uCCGCgGCGcccGACGCGGGCGCcaacaccGCGucgacGGCc -3'
miRNA:   3'- cGGCGgUGC---CUGCGCCUGCG-------CGC-----CCG- -5'
5520 3' -64.1 NC_001798.1 + 62440 0.66 0.565388
Target:  5'- aGCC-CC-CGGACGUcgccgguGGGcCGCGCGacGGCg -3'
miRNA:   3'- -CGGcGGuGCCUGCG-------CCU-GCGCGC--CCG- -5'
5520 3' -64.1 NC_001798.1 + 26089 0.66 0.565388
Target:  5'- uCUGCCGCGGGgccaacgUGCGGuacCGCGUGcGCa -3'
miRNA:   3'- cGGCGGUGCCU-------GCGCCu--GCGCGCcCG- -5'
5520 3' -64.1 NC_001798.1 + 149633 0.66 0.56351
Target:  5'- cCCGCgAUGGGCagguagcgcgugagGcCGGGCGCcgggucGCGGGCc -3'
miRNA:   3'- cGGCGgUGCCUG--------------C-GCCUGCG------CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 79838 0.66 0.56351
Target:  5'- cGUCGCCAUcgccaggcgacgugGGGCGCcucgauGGACGCgGCGGcCg -3'
miRNA:   3'- -CGGCGGUG--------------CCUGCG------CCUGCG-CGCCcG- -5'
5520 3' -64.1 NC_001798.1 + 138145 0.67 0.560697
Target:  5'- aGCUGCUGCGGuCGCgcccccggguccuggGGGCGCGaccCGcGGCc -3'
miRNA:   3'- -CGGCGGUGCCuGCG---------------CCUGCGC---GC-CCG- -5'
5520 3' -64.1 NC_001798.1 + 117299 0.67 0.556951
Target:  5'- cCCGCCAC-GAaaCGGGCGgGgGGGUc -3'
miRNA:   3'- cGGCGGUGcCUgcGCCUGCgCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 30465 0.67 0.556951
Target:  5'- aGCC-CCACGccCGCcGACGCGCaGGGa -3'
miRNA:   3'- -CGGcGGUGCcuGCGcCUGCGCG-CCCg -5'
5520 3' -64.1 NC_001798.1 + 25470 0.67 0.556951
Target:  5'- cGCCGCCuuCGGccCGCuG-CGCGCcucGGGCc -3'
miRNA:   3'- -CGGCGGu-GCCu-GCGcCuGCGCG---CCCG- -5'
5520 3' -64.1 NC_001798.1 + 101831 0.67 0.556951
Target:  5'- aGCuCGCgGCGG--GgGGAgGCGUGGGUc -3'
miRNA:   3'- -CG-GCGgUGCCugCgCCUgCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 43168 0.67 0.556951
Target:  5'- cGCCGCCGCGGcaaACGCcuGGcCG-GuCGGGg -3'
miRNA:   3'- -CGGCGGUGCC---UGCG--CCuGCgC-GCCCg -5'
5520 3' -64.1 NC_001798.1 + 25506 0.67 0.556951
Target:  5'- -gCGCCGCGcGGCGgccUGGAUGCGCcaGGUg -3'
miRNA:   3'- cgGCGGUGC-CUGC---GCCUGCGCGc-CCG- -5'
5520 3' -64.1 NC_001798.1 + 46994 0.67 0.556951
Target:  5'- uUCGUCGCGcucguCGCGGGCGUGCccGGGg -3'
miRNA:   3'- cGGCGGUGCcu---GCGCCUGCGCG--CCCg -5'
5520 3' -64.1 NC_001798.1 + 24779 0.67 0.556951
Target:  5'- cGCgaGCUGCGGuucgUGCGcGACGCGCuGGUg -3'
miRNA:   3'- -CGg-CGGUGCCu---GCGC-CUGCGCGcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.