miRNA display CGI


Results 41 - 60 of 477 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 3' -64.1 NC_001798.1 + 60846 0.66 0.585196
Target:  5'- uCCGCuCGCGcGGCGaCGGGauCGCGUccuccgaagggGGGCg -3'
miRNA:   3'- cGGCG-GUGC-CUGC-GCCU--GCGCG-----------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 78489 0.66 0.585196
Target:  5'- gGCCGagaCCAaGGACGCaGugGUGCGcGCc -3'
miRNA:   3'- -CGGC---GGUgCCUGCGcCugCGCGCcCG- -5'
5520 3' -64.1 NC_001798.1 + 1623 0.66 0.58425
Target:  5'- gGCC-CCGCGGcagaggcGCaGCGGcgGCGCGuCGGGg -3'
miRNA:   3'- -CGGcGGUGCC-------UG-CGCC--UGCGC-GCCCg -5'
5520 3' -64.1 NC_001798.1 + 51717 0.66 0.58425
Target:  5'- -aCGUCACGGGCGaCGcgauccucgaccuGACGgaucgGCGGGCa -3'
miRNA:   3'- cgGCGGUGCCUGC-GC-------------CUGCg----CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 77328 0.66 0.58425
Target:  5'- -gCGCCGCGGgguauguaaagGCGacucggcuggcccUGGAgGCGCGGGg -3'
miRNA:   3'- cgGCGGUGCC-----------UGC-------------GCCUgCGCGCCCg -5'
5520 3' -64.1 NC_001798.1 + 2367 0.66 0.575745
Target:  5'- aGCUcgGCCACGGccCGCGGG-GCGCaguaggccuccaGGGCn -3'
miRNA:   3'- -CGG--CGGUGCCu-GCGCCUgCGCG------------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 45341 0.66 0.575745
Target:  5'- cGUgGUCAUggaGGACGUGGcgauCGCggaGCGGGCc -3'
miRNA:   3'- -CGgCGGUG---CCUGCGCCu---GCG---CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 134978 0.66 0.575745
Target:  5'- cGCgUGCCugGGGgccuggccCGCGGugGgCGCcaGGGUc -3'
miRNA:   3'- -CG-GCGGugCCU--------GCGCCugC-GCG--CCCG- -5'
5520 3' -64.1 NC_001798.1 + 135236 0.66 0.575745
Target:  5'- nCUGCC--GGAagccCGgGGGCGgGCGGGCc -3'
miRNA:   3'- cGGCGGugCCU----GCgCCUGCgCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 10685 0.66 0.575745
Target:  5'- cGCCaCCcacgACGGGCGCaggGGAC-CGCaGGCa -3'
miRNA:   3'- -CGGcGG----UGCCUGCG---CCUGcGCGcCCG- -5'
5520 3' -64.1 NC_001798.1 + 56410 0.66 0.575745
Target:  5'- cCCGCgGCGGGgGCuGGugGCugccGUGGuGCu -3'
miRNA:   3'- cGGCGgUGCCUgCG-CCugCG----CGCC-CG- -5'
5520 3' -64.1 NC_001798.1 + 142132 0.66 0.575745
Target:  5'- cGCUGCCggacGCGGcacagguggugcACGUguuugagucagGGACGCGCGcGGUu -3'
miRNA:   3'- -CGGCGG----UGCC------------UGCG-----------CCUGCGCGC-CCG- -5'
5520 3' -64.1 NC_001798.1 + 146291 0.66 0.575745
Target:  5'- gGCCGa-GCGGGgaGUGGGCG-GCcGGGCg -3'
miRNA:   3'- -CGGCggUGCCUg-CGCCUGCgCG-CCCG- -5'
5520 3' -64.1 NC_001798.1 + 51415 0.66 0.575745
Target:  5'- cGCCGUCGCGcACGauGACG-GCcccgGGGCg -3'
miRNA:   3'- -CGGCGGUGCcUGCgcCUGCgCG----CCCG- -5'
5520 3' -64.1 NC_001798.1 + 58488 0.66 0.575745
Target:  5'- cGUCGCCGCaGAccCGCGGAgauCGCugGUGGuGCg -3'
miRNA:   3'- -CGGCGGUGcCU--GCGCCU---GCG--CGCC-CG- -5'
5520 3' -64.1 NC_001798.1 + 78368 0.66 0.575745
Target:  5'- uGCCGugucCCAgcgaGGACGCGcuggucGCGUGCGcGGCg -3'
miRNA:   3'- -CGGC----GGUg---CCUGCGCc-----UGCGCGC-CCG- -5'
5520 3' -64.1 NC_001798.1 + 12261 0.66 0.574801
Target:  5'- --gGCCGCGGACGaccaggcCGGugGCGCagacccacaGGCc -3'
miRNA:   3'- cggCGGUGCCUGC-------GCCugCGCGc--------CCG- -5'
5520 3' -64.1 NC_001798.1 + 59703 0.66 0.574801
Target:  5'- cCCGUCuuCGGGCGCuuGGugGCgucguccGCGGGg -3'
miRNA:   3'- cGGCGGu-GCCUGCG--CCugCG-------CGCCCg -5'
5520 3' -64.1 NC_001798.1 + 79127 0.66 0.566328
Target:  5'- cGCCGagcgCGCGGAggcCGUGGAgGaGCuGGGCg -3'
miRNA:   3'- -CGGCg---GUGCCU---GCGCCUgCgCG-CCCG- -5'
5520 3' -64.1 NC_001798.1 + 68295 0.66 0.566328
Target:  5'- aCCGCUcgguGCGG-UGCaGACaGCGgGGGCu -3'
miRNA:   3'- cGGCGG----UGCCuGCGcCUG-CGCgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.