miRNA display CGI


Results 41 - 60 of 477 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 3' -64.1 NC_001798.1 + 36493 0.76 0.146879
Target:  5'- cGCCGgCGC-GACGCGGGCG-GCcGGGCg -3'
miRNA:   3'- -CGGCgGUGcCUGCGCCUGCgCG-CCCG- -5'
5520 3' -64.1 NC_001798.1 + 122065 0.76 0.150074
Target:  5'- gGgCGCguCGGACGCGGAgGCggugcugGCGGGCc -3'
miRNA:   3'- -CgGCGguGCCUGCGCCUgCG-------CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 15571 0.76 0.150433
Target:  5'- cGCCGCCGCGGcggggagugGCGacgacuccaCGGAUGCagucGCGGGCg -3'
miRNA:   3'- -CGGCGGUGCC---------UGC---------GCCUGCG----CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 83659 0.76 0.154064
Target:  5'- uGCgGCuCGCGGGCGUcugGGAUGCacugGCGGGCg -3'
miRNA:   3'- -CGgCG-GUGCCUGCG---CCUGCG----CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 85248 0.76 0.154064
Target:  5'- cGCCcccCCGCGGccGCGCGGggccGCGCGCGaGGCu -3'
miRNA:   3'- -CGGc--GGUGCC--UGCGCC----UGCGCGC-CCG- -5'
5520 3' -64.1 NC_001798.1 + 150814 0.76 0.155169
Target:  5'- cGCCGCCGCugcugcugcuccgcgGGGCGCcaggGGGCGCcggucgggucgcgGCGGGCu -3'
miRNA:   3'- -CGGCGGUG---------------CCUGCG----CCUGCG-------------CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 79277 0.76 0.155539
Target:  5'- gGCgGCCGCGGACcuggccccguggGCGGuggaggaguuccgggGCGCGCGGGa -3'
miRNA:   3'- -CGgCGGUGCCUG------------CGCC---------------UGCGCGCCCg -5'
5520 3' -64.1 NC_001798.1 + 24572 0.76 0.157775
Target:  5'- gGCCgGCgCGCGGAgGCGGGC-CGCGuGGCc -3'
miRNA:   3'- -CGG-CG-GUGCCUgCGCCUGcGCGC-CCG- -5'
5520 3' -64.1 NC_001798.1 + 132143 0.76 0.157775
Target:  5'- cGCCGCCGgGGGC-CGG-CGgGCGGGg -3'
miRNA:   3'- -CGGCGGUgCCUGcGCCuGCgCGCCCg -5'
5520 3' -64.1 NC_001798.1 + 145773 0.76 0.158904
Target:  5'- cGCCGCCcacccCGGgguccacacaggagcGCGCGGGCGgcagaaaCGCGGGCg -3'
miRNA:   3'- -CGGCGGu----GCC---------------UGCGCCUGC-------GCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 128587 0.76 0.161184
Target:  5'- gGCCG-CGCGGACGCGGGCGUcaacgacgacGCcgacgccGGGCg -3'
miRNA:   3'- -CGGCgGUGCCUGCGCCUGCG----------CG-------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 21944 0.76 0.161567
Target:  5'- cCCGCCcccuuuggGCGGAgCGCgGGAUGaCGCGGGCc -3'
miRNA:   3'- cGGCGG--------UGCCU-GCG-CCUGC-GCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 85988 0.76 0.161567
Target:  5'- gGCCGCCGCcgGGGCGCuGGCGCagGgGGGUg -3'
miRNA:   3'- -CGGCGGUG--CCUGCGcCUGCG--CgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 75261 0.76 0.161567
Target:  5'- gGCCGCCACGGcgguccggcuCGCGG-CGCGCGaugccgcccuGGCc -3'
miRNA:   3'- -CGGCGGUGCCu---------GCGCCuGCGCGC----------CCG- -5'
5520 3' -64.1 NC_001798.1 + 70311 0.76 0.161567
Target:  5'- gGgCGCgGCGGucggcccgGCGGAgGCGCGGGCg -3'
miRNA:   3'- -CgGCGgUGCCug------CGCCUgCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 135490 0.76 0.16544
Target:  5'- aCC-CCGgGGACGCGGACGCcGCGcacGGCg -3'
miRNA:   3'- cGGcGGUgCCUGCGCCUGCG-CGC---CCG- -5'
5520 3' -64.1 NC_001798.1 + 36568 0.75 0.168997
Target:  5'- cGCgGCgGcCGGGCGgGGGCGCGCggcggccGGGCg -3'
miRNA:   3'- -CGgCGgU-GCCUGCgCCUGCGCG-------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 36526 0.75 0.168997
Target:  5'- cGCgGCgGcCGGGCGgGGGCGCGCggcggccGGGCg -3'
miRNA:   3'- -CGgCGgU-GCCUGCgCCUGCGCG-------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 36610 0.75 0.168997
Target:  5'- cGCgGCgGcCGGGCGgGGGCGCGCggcggccGGGCg -3'
miRNA:   3'- -CGgCGgU-GCCUGCgCCUGCGCG-------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 111812 0.75 0.169397
Target:  5'- cGCCgGUCGCGGGCGUccagGGGCugGCGCGGGg -3'
miRNA:   3'- -CGG-CGGUGCCUGCG----CCUG--CGCGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.