miRNA display CGI


Results 21 - 40 of 477 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 3' -64.1 NC_001798.1 + 26368 0.8 0.090227
Target:  5'- aGCUG-CGCGGGcCGCGGcgggaguucuGCGCGCGGGCg -3'
miRNA:   3'- -CGGCgGUGCCU-GCGCC----------UGCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 69479 0.79 0.096209
Target:  5'- gGCCGUCgcggcgagcgauggGCGGGCGCaGGACGCGCcggagcgGGGCg -3'
miRNA:   3'- -CGGCGG--------------UGCCUGCG-CCUGCGCG-------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 2204 0.79 0.099583
Target:  5'- gGCCGCCGCGcGGCGCagcgggcccgaGGcGCGCaGCGGGCc -3'
miRNA:   3'- -CGGCGGUGC-CUGCG-----------CC-UGCG-CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 86263 0.78 0.107194
Target:  5'- aCgGCCGgGGGCGCGGGCGCaccgGCGGGg -3'
miRNA:   3'- cGgCGGUgCCUGCGCCUGCG----CGCCCg -5'
5520 3' -64.1 NC_001798.1 + 53091 0.78 0.107194
Target:  5'- uCCGCCAUGcaACGcCGGGCGCGCGGcGCg -3'
miRNA:   3'- cGGCGGUGCc-UGC-GCCUGCGCGCC-CG- -5'
5520 3' -64.1 NC_001798.1 + 58690 0.78 0.10985
Target:  5'- cGCCGUCAgGGcCGCGGcgGCGCGgGGGUc -3'
miRNA:   3'- -CGGCGGUgCCuGCGCC--UGCGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 86105 0.78 0.118193
Target:  5'- cGCCGCCGCGGACGCccgccGCGCcGCGGucaGCg -3'
miRNA:   3'- -CGGCGGUGCCUGCGcc---UGCG-CGCC---CG- -5'
5520 3' -64.1 NC_001798.1 + 66759 0.78 0.124078
Target:  5'- uCCGCCugGGGUGCGG-CgGCGUGGGCc -3'
miRNA:   3'- cGGCGGugCCUGCGCCuG-CGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 2260 0.77 0.132456
Target:  5'- cGCCGCCgggggGCGGggcggcgcagcGCGCGGccagcgaggccagcGCGCGCGGGUc -3'
miRNA:   3'- -CGGCGG-----UGCC-----------UGCGCC--------------UGCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 22260 0.77 0.133418
Target:  5'- aGCCGCCcgcgcCGGGCGCuaauGAgaugcCGCGCGGGCg -3'
miRNA:   3'- -CGGCGGu----GCCUGCGc---CU-----GCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 8859 0.77 0.133418
Target:  5'- gGCCGggaggucaUCGCGGACGCGGAaggGCGCuGGCg -3'
miRNA:   3'- -CGGC--------GGUGCCUGCGCCUg--CGCGcCCG- -5'
5520 3' -64.1 NC_001798.1 + 9124 0.77 0.137995
Target:  5'- aGCCGCCgcgagguggucuGCGGcACGCGGGCGCgGCgccgcccgcgccgggGGGCa -3'
miRNA:   3'- -CGGCGG------------UGCC-UGCGCCUGCG-CG---------------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 75992 0.77 0.143402
Target:  5'- cGCCGCCcCGGGCGCcGGCG-GCaGGGCc -3'
miRNA:   3'- -CGGCGGuGCCUGCGcCUGCgCG-CCCG- -5'
5520 3' -64.1 NC_001798.1 + 52740 0.77 0.143402
Target:  5'- cGCCGCCGCGGAacaCGUGGAccuucgcccCGCGUccucggcgccccGGGCg -3'
miRNA:   3'- -CGGCGGUGCCU---GCGCCU---------GCGCG------------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 23865 0.77 0.143402
Target:  5'- aGCCGCCccggccucugGgGGGCGCccgaggcggaGGAgGCGCGGGCc -3'
miRNA:   3'- -CGGCGG----------UgCCUGCG----------CCUgCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 172 0.77 0.143402
Target:  5'- cGCgCGCCGCGGGgcugccuuccCGCGGGCGCccccGCGcGGCu -3'
miRNA:   3'- -CG-GCGGUGCCU----------GCGCCUGCG----CGC-CCG- -5'
5520 3' -64.1 NC_001798.1 + 154510 0.77 0.143402
Target:  5'- cGCgCGCCGCGGGgcugccuuccCGCGGGCGCccccGCGcGGCu -3'
miRNA:   3'- -CG-GCGGUGCCU----------GCGCCUGCG----CGC-CCG- -5'
5520 3' -64.1 NC_001798.1 + 61819 0.76 0.145828
Target:  5'- cGCCGCCGCGGGCacgccuucgccccgGgGGACcggggaaCGCGGGCc -3'
miRNA:   3'- -CGGCGGUGCCUG--------------CgCCUGc------GCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 36063 0.76 0.146528
Target:  5'- uGCUGCCggaggcuGCGGGCGCGGGguaggUGgGUGGGCg -3'
miRNA:   3'- -CGGCGG-------UGCCUGCGCCU-----GCgCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 27254 0.76 0.146879
Target:  5'- gGCgGCCGCGGGaccgcagcccCGUGG-CGCGCGGGg -3'
miRNA:   3'- -CGgCGGUGCCU----------GCGCCuGCGCGCCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.