miRNA display CGI


Results 21 - 40 of 477 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 3' -64.1 NC_001798.1 + 2552 0.73 0.256241
Target:  5'- gGCCcCCGCGGGagggGCGGcCGCG-GGGCg -3'
miRNA:   3'- -CGGcGGUGCCUg---CGCCuGCGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 2671 0.74 0.199529
Target:  5'- cCCGCggCGCGGAgGCGGGCGCgGCGaGCg -3'
miRNA:   3'- cGGCG--GUGCCUgCGCCUGCG-CGCcCG- -5'
5520 3' -64.1 NC_001798.1 + 2763 0.7 0.38405
Target:  5'- uCCGCgGCGGcgGCgGCGGcggagcucagcAgGCGCGGGCu -3'
miRNA:   3'- cGGCGgUGCC--UG-CGCC-----------UgCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 2872 0.69 0.407735
Target:  5'- cGCUGCCGCcGGccacGCGCaGGucccCGCGCaGGCg -3'
miRNA:   3'- -CGGCGGUG-CC----UGCG-CCu---GCGCGcCCG- -5'
5520 3' -64.1 NC_001798.1 + 2949 0.66 0.604182
Target:  5'- aGCCagGCgCGCaGGCG-GGGCGCGUcGGCg -3'
miRNA:   3'- -CGG--CG-GUGcCUGCgCCUGCGCGcCCG- -5'
5520 3' -64.1 NC_001798.1 + 2990 0.81 0.06862
Target:  5'- gGCCGgcCCGCGGGCccCGGGCGCGgGGGCg -3'
miRNA:   3'- -CGGC--GGUGCCUGc-GCCUGCGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 3109 0.67 0.547619
Target:  5'- gGCCaggcacuCCACGGccACGCGGcccgccuccGCGCGCcGGCc -3'
miRNA:   3'- -CGGc------GGUGCC--UGCGCC---------UGCGCGcCCG- -5'
5520 3' -64.1 NC_001798.1 + 3202 0.8 0.077743
Target:  5'- gGCCGgCGCGGAgGCGGGCGCgGCGcucaGGCg -3'
miRNA:   3'- -CGGCgGUGCCUgCGCCUGCG-CGC----CCG- -5'
5520 3' -64.1 NC_001798.1 + 3301 0.75 0.173438
Target:  5'- cGCCGCCGCcgacggcaacgGGGCgGCGGcgGCG-GCGGGCu -3'
miRNA:   3'- -CGGCGGUG-----------CCUG-CGCC--UGCgCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 3423 0.71 0.318664
Target:  5'- cGCgCGCCAgcagGGGCGCGuAgGCGCGGcGCa -3'
miRNA:   3'- -CG-GCGGUg---CCUGCGCcUgCGCGCC-CG- -5'
5520 3' -64.1 NC_001798.1 + 3550 0.67 0.519942
Target:  5'- cGCCGCCAUGG-CGUaccccaGGugGgGCacGGCc -3'
miRNA:   3'- -CGGCGGUGCCuGCG------CCugCgCGc-CCG- -5'
5520 3' -64.1 NC_001798.1 + 3657 0.71 0.318664
Target:  5'- -gCGCCAcgucccCGGGCGCc-ACGCGCGGGUu -3'
miRNA:   3'- cgGCGGU------GCCUGCGccUGCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 3759 0.7 0.37636
Target:  5'- cGUCGCCcagcuCGGGCGCccacacGGGCGC-CGGGg -3'
miRNA:   3'- -CGGCGGu----GCCUGCG------CCUGCGcGCCCg -5'
5520 3' -64.1 NC_001798.1 + 4000 0.7 0.37636
Target:  5'- gGCCGCCcggccgugaaGCGGcccguggcguCGCGGccggccaccgcCGCGCGGGCc -3'
miRNA:   3'- -CGGCGG----------UGCCu---------GCGCCu----------GCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 4080 0.75 0.177565
Target:  5'- gGUCGCCGCGGGgGUccGGGCcgGgGCGGGCu -3'
miRNA:   3'- -CGGCGGUGCCUgCG--CCUG--CgCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 4124 0.66 0.613706
Target:  5'- gGCUcgGCCG-GGGCGCcgcccccgGGGCccuCGCGGGCa -3'
miRNA:   3'- -CGG--CGGUgCCUGCG--------CCUGc--GCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 4194 0.75 0.181353
Target:  5'- cCCGCCcgcggcguggucuGCGGcGCugGCGGGgGCGCGGGCg -3'
miRNA:   3'- cGGCGG-------------UGCC-UG--CGCCUgCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 4375 0.72 0.28549
Target:  5'- cGCCgGCgGCGGugGUGGugGUggugguggugucgGCGGGg -3'
miRNA:   3'- -CGG-CGgUGCCugCGCCugCG-------------CGCCCg -5'
5520 3' -64.1 NC_001798.1 + 4458 0.72 0.273846
Target:  5'- cGCC-CCGCGGAcCGCGGACGUcgucuccgguccGCGGa- -3'
miRNA:   3'- -CGGcGGUGCCU-GCGCCUGCG------------CGCCcg -5'
5520 3' -64.1 NC_001798.1 + 4583 0.66 0.566328
Target:  5'- uCCGCgGCGGA-GaaGGCGaGCGGGCc -3'
miRNA:   3'- cGGCGgUGCCUgCgcCUGCgCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.