miRNA display CGI


Results 1 - 20 of 477 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 3' -64.1 NC_001798.1 + 22326 1.13 0.000387
Target:  5'- cGCCGCCACGGACGCGGACGCGCGGGCg -3'
miRNA:   3'- -CGGCGGUGCCUGCGCCUGCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 53648 0.87 0.029002
Target:  5'- cGCCGCCGCGGugGCGGgguuGCGCGaCGcGGCc -3'
miRNA:   3'- -CGGCGGUGCCugCGCC----UGCGC-GC-CCG- -5'
5520 3' -64.1 NC_001798.1 + 105411 0.86 0.030522
Target:  5'- gGCCGCCGCGGcCGCGG-UGCGCuGGGCc -3'
miRNA:   3'- -CGGCGGUGCCuGCGCCuGCGCG-CCCG- -5'
5520 3' -64.1 NC_001798.1 + 153670 0.86 0.032951
Target:  5'- gGCgCGuCCGCGGGCGgGGACGCGgGGGCc -3'
miRNA:   3'- -CG-GC-GGUGCCUGCgCCUGCGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 11626 0.85 0.035569
Target:  5'- cGCCGCuCGCGGGCGCGGGCGUcccuguguccccGgGGGCg -3'
miRNA:   3'- -CGGCG-GUGCCUGCGCCUGCG------------CgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 26207 0.85 0.037427
Target:  5'- cGCCGCCuCGGGCGCGGGCGaCGCcauGGCg -3'
miRNA:   3'- -CGGCGGuGCCUGCGCCUGC-GCGc--CCG- -5'
5520 3' -64.1 NC_001798.1 + 28815 0.85 0.039381
Target:  5'- cGCCGCCGCGGGCcCGGGC-CGuCGGGCg -3'
miRNA:   3'- -CGGCGGUGCCUGcGCCUGcGC-GCCCG- -5'
5520 3' -64.1 NC_001798.1 + 94994 0.84 0.047034
Target:  5'- gGCCGCCugGGcccCGCaGGGCgGCGCGGGCc -3'
miRNA:   3'- -CGGCGGugCCu--GCG-CCUG-CGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 97640 0.83 0.048239
Target:  5'- gGCCGCCGCGGACguGCGGGaGCGCcGGCg -3'
miRNA:   3'- -CGGCGGUGCCUG--CGCCUgCGCGcCCG- -5'
5520 3' -64.1 NC_001798.1 + 9662 0.82 0.057129
Target:  5'- gGCCGCgCGCGGaggGCGCGGgauggggggcucucACGUGCGGGCg -3'
miRNA:   3'- -CGGCG-GUGCC---UGCGCC--------------UGCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 81113 0.81 0.066923
Target:  5'- -gCGCCGCcGACGCGGAccccuucuuCGCGCGGGCc -3'
miRNA:   3'- cgGCGGUGcCUGCGCCU---------GCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 2990 0.81 0.06862
Target:  5'- gGCCGgcCCGCGGGCccCGGGCGCGgGGGCg -3'
miRNA:   3'- -CGGC--GGUGCCUGc-GCCUGCGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 97520 0.81 0.070358
Target:  5'- gGCCGCCGCGGAggaggggggGCGGAgGCGUGGcGCg -3'
miRNA:   3'- -CGGCGGUGCCUg--------CGCCUgCGCGCC-CG- -5'
5520 3' -64.1 NC_001798.1 + 88862 0.81 0.070358
Target:  5'- gGUCGUCACGGugGCGGccACGUGCaGGCa -3'
miRNA:   3'- -CGGCGGUGCCugCGCC--UGCGCGcCCG- -5'
5520 3' -64.1 NC_001798.1 + 77204 0.81 0.073962
Target:  5'- cCCGCgGCgacgguGGACGCGGcCGUGCGGGCg -3'
miRNA:   3'- cGGCGgUG------CCUGCGCCuGCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 31634 0.81 0.07583
Target:  5'- cGCCGCCcccguggugucuGCGaGCGCGGACGCGgcCGGGCc -3'
miRNA:   3'- -CGGCGG------------UGCcUGCGCCUGCGC--GCCCG- -5'
5520 3' -64.1 NC_001798.1 + 3202 0.8 0.077743
Target:  5'- gGCCGgCGCGGAgGCGGGCGCgGCGcucaGGCg -3'
miRNA:   3'- -CGGCgGUGCCUgCGCCUGCG-CGC----CCG- -5'
5520 3' -64.1 NC_001798.1 + 27482 0.8 0.081709
Target:  5'- uGCCGCgCggggGCGGGCGCGGgaaaaaagccGCGCGgGGGCg -3'
miRNA:   3'- -CGGCG-G----UGCCUGCGCC----------UGCGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 28376 0.8 0.088021
Target:  5'- cCCGcCCGCGGACGCGc-CGCGCGGGa -3'
miRNA:   3'- cGGC-GGUGCCUGCGCcuGCGCGCCCg -5'
5520 3' -64.1 NC_001798.1 + 26368 0.8 0.090227
Target:  5'- aGCUG-CGCGGGcCGCGGcgggaguucuGCGCGCGGGCg -3'
miRNA:   3'- -CGGCgGUGCCU-GCGCC----------UGCGCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.