miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 137989 0.66 0.922275
Target:  5'- uGGGCgCGcCGCAgcucGCGGUcgCgCGCCUg -3'
miRNA:   3'- -CCCG-GC-GCGUauuaCGCCAa-G-GUGGA- -5'
5520 5' -55.9 NC_001798.1 + 131566 0.66 0.922275
Target:  5'- cGGCCcgGUGCGUAAcUGUGG-UCCGCg- -3'
miRNA:   3'- cCCGG--CGCGUAUU-ACGCCaAGGUGga -5'
5520 5' -55.9 NC_001798.1 + 109623 0.66 0.922275
Target:  5'- cGGCCGCGCGcUAAccGCcccgauGG-UCCGCCg -3'
miRNA:   3'- cCCGGCGCGU-AUUa-CG------CCaAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 77720 0.66 0.922275
Target:  5'- uGGGCCGCcgGCGUcgagGCGGcgCUggACCg -3'
miRNA:   3'- -CCCGGCG--CGUAuua-CGCCaaGG--UGGa -5'
5520 5' -55.9 NC_001798.1 + 149421 0.66 0.921721
Target:  5'- gGGGCCucacgcaguugcGCGCGUGcucggggagcaggGUGCGGcggcUCCACg- -3'
miRNA:   3'- -CCCGG------------CGCGUAU-------------UACGCCa---AGGUGga -5'
5520 5' -55.9 NC_001798.1 + 109803 0.66 0.921165
Target:  5'- cGGGCCGCGCuagcca-GGaccgaCCACCa -3'
miRNA:   3'- -CCCGGCGCGuauuacgCCaa---GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 41177 0.66 0.920606
Target:  5'- cGGCCG-GCGUAGUucaaaagauaggucGcCGGggCCACCa -3'
miRNA:   3'- cCCGGCgCGUAUUA--------------C-GCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 5305 0.66 0.917204
Target:  5'- -cGCCGCGCcccggcucgccGgGGUUCCGCCc -3'
miRNA:   3'- ccCGGCGCGuauua------CgCCAAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 45192 0.66 0.916629
Target:  5'- gGGGCCguugcgGCGCAUcgggacaaGAUGCG---CCGCCUg -3'
miRNA:   3'- -CCCGG------CGCGUA--------UUACGCcaaGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 72687 0.66 0.916629
Target:  5'- uGGCCGU-CGUGcgGCGGgaaaUCCACg- -3'
miRNA:   3'- cCCGGCGcGUAUuaCGCCa---AGGUGga -5'
5520 5' -55.9 NC_001798.1 + 96562 0.66 0.916629
Target:  5'- cGGCUGCaGaCGUAcgGCGGggacgUCCGCa- -3'
miRNA:   3'- cCCGGCG-C-GUAUuaCGCCa----AGGUGga -5'
5520 5' -55.9 NC_001798.1 + 28258 0.66 0.914888
Target:  5'- -cGCCGCGCAaggAGcGCGGgccgcagcgcccccUUCCGCCc -3'
miRNA:   3'- ccCGGCGCGUa--UUaCGCC--------------AAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 31346 0.66 0.914303
Target:  5'- gGGGCgCGCGCAggcGcgGCGGgugggcgaagaCGCCg -3'
miRNA:   3'- -CCCG-GCGCGUa--UuaCGCCaag--------GUGGa -5'
5520 5' -55.9 NC_001798.1 + 53890 0.66 0.910744
Target:  5'- aGGGCC-CGCGgagacguuUGCGcg-CCACCUg -3'
miRNA:   3'- -CCCGGcGCGUauu-----ACGCcaaGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 75539 0.66 0.910744
Target:  5'- uGGCguccaCGCGCAUGAgccugGCGGacguggCCGCCc -3'
miRNA:   3'- cCCG-----GCGCGUAUUa----CGCCaa----GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 127727 0.66 0.910744
Target:  5'- cGGCUGCuCGUAaaaAUGCGG--CCGCCg -3'
miRNA:   3'- cCCGGCGcGUAU---UACGCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 149477 0.66 0.910744
Target:  5'- gGGGCCGCgGCccgcaGCaGG-UCCGCCa -3'
miRNA:   3'- -CCCGGCG-CGuauuaCG-CCaAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 126923 0.66 0.908933
Target:  5'- uGGCgCGCGCcgugGUGuuccugaacaccagGUGCGGgaucagCCACCUg -3'
miRNA:   3'- cCCG-GCGCG----UAU--------------UACGCCaa----GGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 148437 0.66 0.904623
Target:  5'- uGGGCaCGgGCGUaAGUGCGGgugcaUGCCUc -3'
miRNA:   3'- -CCCG-GCgCGUA-UUACGCCaag--GUGGA- -5'
5520 5' -55.9 NC_001798.1 + 72230 0.66 0.904623
Target:  5'- gGGGCCGUcgaGCAgc-UGCGGcccgcggUCCAgCUg -3'
miRNA:   3'- -CCCGGCG---CGUauuACGCCa------AGGUgGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.