Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5520 | 5' | -55.9 | NC_001798.1 | + | 131566 | 0.66 | 0.922275 |
Target: 5'- cGGCCcgGUGCGUAAcUGUGG-UCCGCg- -3' miRNA: 3'- cCCGG--CGCGUAUU-ACGCCaAGGUGga -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 109623 | 0.66 | 0.922275 |
Target: 5'- cGGCCGCGCGcUAAccGCcccgauGG-UCCGCCg -3' miRNA: 3'- cCCGGCGCGU-AUUa-CG------CCaAGGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 77720 | 0.66 | 0.922275 |
Target: 5'- uGGGCCGCcgGCGUcgagGCGGcgCUggACCg -3' miRNA: 3'- -CCCGGCG--CGUAuua-CGCCaaGG--UGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 137989 | 0.66 | 0.922275 |
Target: 5'- uGGGCgCGcCGCAgcucGCGGUcgCgCGCCUg -3' miRNA: 3'- -CCCG-GC-GCGUauuaCGCCAa-G-GUGGA- -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 149421 | 0.66 | 0.921721 |
Target: 5'- gGGGCCucacgcaguugcGCGCGUGcucggggagcaggGUGCGGcggcUCCACg- -3' miRNA: 3'- -CCCGG------------CGCGUAU-------------UACGCCa---AGGUGga -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 109803 | 0.66 | 0.921165 |
Target: 5'- cGGGCCGCGCuagcca-GGaccgaCCACCa -3' miRNA: 3'- -CCCGGCGCGuauuacgCCaa---GGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 41177 | 0.66 | 0.920606 |
Target: 5'- cGGCCG-GCGUAGUucaaaagauaggucGcCGGggCCACCa -3' miRNA: 3'- cCCGGCgCGUAUUA--------------C-GCCaaGGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 5305 | 0.66 | 0.917204 |
Target: 5'- -cGCCGCGCcccggcucgccGgGGUUCCGCCc -3' miRNA: 3'- ccCGGCGCGuauua------CgCCAAGGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 45192 | 0.66 | 0.916629 |
Target: 5'- gGGGCCguugcgGCGCAUcgggacaaGAUGCG---CCGCCUg -3' miRNA: 3'- -CCCGG------CGCGUA--------UUACGCcaaGGUGGA- -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 72687 | 0.66 | 0.916629 |
Target: 5'- uGGCCGU-CGUGcgGCGGgaaaUCCACg- -3' miRNA: 3'- cCCGGCGcGUAUuaCGCCa---AGGUGga -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 96562 | 0.66 | 0.916629 |
Target: 5'- cGGCUGCaGaCGUAcgGCGGggacgUCCGCa- -3' miRNA: 3'- cCCGGCG-C-GUAUuaCGCCa----AGGUGga -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 28258 | 0.66 | 0.914888 |
Target: 5'- -cGCCGCGCAaggAGcGCGGgccgcagcgcccccUUCCGCCc -3' miRNA: 3'- ccCGGCGCGUa--UUaCGCC--------------AAGGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 31346 | 0.66 | 0.914303 |
Target: 5'- gGGGCgCGCGCAggcGcgGCGGgugggcgaagaCGCCg -3' miRNA: 3'- -CCCG-GCGCGUa--UuaCGCCaag--------GUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 149477 | 0.66 | 0.910744 |
Target: 5'- gGGGCCGCgGCccgcaGCaGG-UCCGCCa -3' miRNA: 3'- -CCCGGCG-CGuauuaCG-CCaAGGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 127727 | 0.66 | 0.910744 |
Target: 5'- cGGCUGCuCGUAaaaAUGCGG--CCGCCg -3' miRNA: 3'- cCCGGCGcGUAU---UACGCCaaGGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 75539 | 0.66 | 0.910744 |
Target: 5'- uGGCguccaCGCGCAUGAgccugGCGGacguggCCGCCc -3' miRNA: 3'- cCCG-----GCGCGUAUUa----CGCCaa----GGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 53890 | 0.66 | 0.910744 |
Target: 5'- aGGGCC-CGCGgagacguuUGCGcg-CCACCUg -3' miRNA: 3'- -CCCGGcGCGUauu-----ACGCcaaGGUGGA- -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 126923 | 0.66 | 0.908933 |
Target: 5'- uGGCgCGCGCcgugGUGuuccugaacaccagGUGCGGgaucagCCACCUg -3' miRNA: 3'- cCCG-GCGCG----UAU--------------UACGCCaa----GGUGGA- -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 5955 | 0.66 | 0.904623 |
Target: 5'- aGGGCCG-GCGUcc--CGGUcgCCGCCg -3' miRNA: 3'- -CCCGGCgCGUAuuacGCCAa-GGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 148437 | 0.66 | 0.904623 |
Target: 5'- uGGGCaCGgGCGUaAGUGCGGgugcaUGCCUc -3' miRNA: 3'- -CCCG-GCgCGUA-UUACGCCaag--GUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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