Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5520 | 5' | -55.9 | NC_001798.1 | + | 5955 | 0.66 | 0.904623 |
Target: 5'- aGGGCCG-GCGUcc--CGGUcgCCGCCg -3' miRNA: 3'- -CCCGGCgCGUAuuacGCCAa-GGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 115030 | 0.66 | 0.902741 |
Target: 5'- aGGCCGUGCGgagccuggacgacGUGGgccgCCACCUg -3' miRNA: 3'- cCCGGCGCGUauua---------CGCCaa--GGUGGA- -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 146427 | 0.66 | 0.898268 |
Target: 5'- -aGCCGgGCAgAGUGCGGagCCcCCg -3' miRNA: 3'- ccCGGCgCGUaUUACGCCaaGGuGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 24773 | 0.66 | 0.898268 |
Target: 5'- uGGCUGCGCGagcUGCGGUUCgugCGCg- -3' miRNA: 3'- cCCGGCGCGUauuACGCCAAG---GUGga -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 150579 | 0.66 | 0.898268 |
Target: 5'- gGGGCgGCGCGgagAcgGCGGgggagagUCGCUg -3' miRNA: 3'- -CCCGgCGCGUa--UuaCGCCaa-----GGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 121715 | 0.66 | 0.898268 |
Target: 5'- -cGCCGCGaCGgagGcgGCGGc-CCACCUg -3' miRNA: 3'- ccCGGCGC-GUa--UuaCGCCaaGGUGGA- -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 103164 | 0.66 | 0.896316 |
Target: 5'- aGGGCCacguGCGCAaacagGGUGCGGUcgggcggaaccucgUCCcCCc -3' miRNA: 3'- -CCCGG----CGCGUa----UUACGCCA--------------AGGuGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 86097 | 0.66 | 0.891681 |
Target: 5'- cGGCUGCGCGccgccGCGGacgcCCGCCg -3' miRNA: 3'- cCCGGCGCGUauua-CGCCaa--GGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 12713 | 0.66 | 0.891681 |
Target: 5'- gGGGCgGCggggGCGUGGUGCGGcgCgACg- -3' miRNA: 3'- -CCCGgCG----CGUAUUACGCCaaGgUGga -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 13882 | 0.66 | 0.891681 |
Target: 5'- uGGUCGaaucggaGUAUGgugGUGCGGUgggUCCGCCa -3' miRNA: 3'- cCCGGCg------CGUAU---UACGCCA---AGGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 52172 | 0.67 | 0.884866 |
Target: 5'- aGGCCGCGUu---UGCGGggCgCGuCCUg -3' miRNA: 3'- cCCGGCGCGuauuACGCCaaG-GU-GGA- -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 2222 | 0.67 | 0.884866 |
Target: 5'- cGGGCCcgaggcGCGCAgcgggccgaagGcgGCGGgcgcgCCGCCg -3' miRNA: 3'- -CCCGG------CGCGUa----------UuaCGCCaa---GGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 28568 | 0.67 | 0.884866 |
Target: 5'- -cGCCGCGC---GUGCaGGUgcgCCAUCUg -3' miRNA: 3'- ccCGGCGCGuauUACG-CCAa--GGUGGA- -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 34975 | 0.67 | 0.877827 |
Target: 5'- cGGCCGC-CGaGGUGCGGgggCC-CCUc -3' miRNA: 3'- cCCGGCGcGUaUUACGCCaa-GGuGGA- -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 89541 | 0.67 | 0.873498 |
Target: 5'- uGGCCGuCGUagAUGGUGCGGgugauguugaugcCCGCCa -3' miRNA: 3'- cCCGGC-GCG--UAUUACGCCaa-----------GGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 143380 | 0.67 | 0.870569 |
Target: 5'- aGGCCccacguGCGCGUccGGUGCGG-UCC-CCg -3' miRNA: 3'- cCCGG------CGCGUA--UUACGCCaAGGuGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 65743 | 0.67 | 0.870569 |
Target: 5'- aGGGCCG-GCAUGAUgcugGCGGUgCCGg-- -3' miRNA: 3'- -CCCGGCgCGUAUUA----CGCCAaGGUgga -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 23834 | 0.67 | 0.867605 |
Target: 5'- gGGGCgCGUGCuGUAcgGCGGgcugggcgacagCCGCCc -3' miRNA: 3'- -CCCG-GCGCG-UAUuaCGCCaa----------GGUGGa -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 82174 | 0.67 | 0.863097 |
Target: 5'- cGGCCGCGguUuccgccgcaGcgGCGGcagugCCGCCUu -3' miRNA: 3'- cCCGGCGCguA---------UuaCGCCaa---GGUGGA- -5' |
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5520 | 5' | -55.9 | NC_001798.1 | + | 148196 | 0.67 | 0.863097 |
Target: 5'- uGGGCCGUGUgguGUGGUGUGGUg-UugCg -3' miRNA: 3'- -CCCGGCGCG---UAUUACGCCAagGugGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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