miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 149421 0.66 0.921721
Target:  5'- gGGGCCucacgcaguugcGCGCGUGcucggggagcaggGUGCGGcggcUCCACg- -3'
miRNA:   3'- -CCCGG------------CGCGUAU-------------UACGCCa---AGGUGga -5'
5520 5' -55.9 NC_001798.1 + 109803 0.66 0.921165
Target:  5'- cGGGCCGCGCuagcca-GGaccgaCCACCa -3'
miRNA:   3'- -CCCGGCGCGuauuacgCCaa---GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 41177 0.66 0.920606
Target:  5'- cGGCCG-GCGUAGUucaaaagauaggucGcCGGggCCACCa -3'
miRNA:   3'- cCCGGCgCGUAUUA--------------C-GCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 5305 0.66 0.917204
Target:  5'- -cGCCGCGCcccggcucgccGgGGUUCCGCCc -3'
miRNA:   3'- ccCGGCGCGuauua------CgCCAAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 149477 0.66 0.910744
Target:  5'- gGGGCCGCgGCccgcaGCaGG-UCCGCCa -3'
miRNA:   3'- -CCCGGCG-CGuauuaCG-CCaAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 31346 0.66 0.914303
Target:  5'- gGGGCgCGCGCAggcGcgGCGGgugggcgaagaCGCCg -3'
miRNA:   3'- -CCCG-GCGCGUa--UuaCGCCaag--------GUGGa -5'
5520 5' -55.9 NC_001798.1 + 28258 0.66 0.914888
Target:  5'- -cGCCGCGCAaggAGcGCGGgccgcagcgcccccUUCCGCCc -3'
miRNA:   3'- ccCGGCGCGUa--UUaCGCC--------------AAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 45192 0.66 0.916629
Target:  5'- gGGGCCguugcgGCGCAUcgggacaaGAUGCG---CCGCCUg -3'
miRNA:   3'- -CCCGG------CGCGUA--------UUACGCcaaGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 72687 0.66 0.916629
Target:  5'- uGGCCGU-CGUGcgGCGGgaaaUCCACg- -3'
miRNA:   3'- cCCGGCGcGUAUuaCGCCa---AGGUGga -5'
5520 5' -55.9 NC_001798.1 + 96562 0.66 0.916629
Target:  5'- cGGCUGCaGaCGUAcgGCGGggacgUCCGCa- -3'
miRNA:   3'- cCCGGCG-C-GUAUuaCGCCa----AGGUGga -5'
5520 5' -55.9 NC_001798.1 + 148196 0.67 0.863097
Target:  5'- uGGGCCGUGUgguGUGGUGUGGUg-UugCg -3'
miRNA:   3'- -CCCGGCGCG---UAUUACGCCAagGugGa -5'
5520 5' -55.9 NC_001798.1 + 82174 0.67 0.863097
Target:  5'- cGGCCGCGguUuccgccgcaGcgGCGGcagugCCGCCUu -3'
miRNA:   3'- cCCGGCGCguA---------UuaCGCCaa---GGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 23834 0.67 0.867605
Target:  5'- gGGGCgCGUGCuGUAcgGCGGgcugggcgacagCCGCCc -3'
miRNA:   3'- -CCCG-GCGCG-UAUuaCGCCaa----------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 65743 0.67 0.870569
Target:  5'- aGGGCCG-GCAUGAUgcugGCGGUgCCGg-- -3'
miRNA:   3'- -CCCGGCgCGUAUUA----CGCCAaGGUgga -5'
5520 5' -55.9 NC_001798.1 + 143380 0.67 0.870569
Target:  5'- aGGCCccacguGCGCGUccGGUGCGG-UCC-CCg -3'
miRNA:   3'- cCCGG------CGCGUA--UUACGCCaAGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 89541 0.67 0.873498
Target:  5'- uGGCCGuCGUagAUGGUGCGGgugauguugaugcCCGCCa -3'
miRNA:   3'- cCCGGC-GCG--UAUUACGCCaa-----------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 34975 0.67 0.877827
Target:  5'- cGGCCGC-CGaGGUGCGGgggCC-CCUc -3'
miRNA:   3'- cCCGGCGcGUaUUACGCCaa-GGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 52172 0.67 0.884866
Target:  5'- aGGCCGCGUu---UGCGGggCgCGuCCUg -3'
miRNA:   3'- cCCGGCGCGuauuACGCCaaG-GU-GGA- -5'
5520 5' -55.9 NC_001798.1 + 2222 0.67 0.884866
Target:  5'- cGGGCCcgaggcGCGCAgcgggccgaagGcgGCGGgcgcgCCGCCg -3'
miRNA:   3'- -CCCGG------CGCGUa----------UuaCGCCaa---GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 21720 0.67 0.862338
Target:  5'- -cGCCGCGCAgccggugugccccUGGUGCGGcggCgACCg -3'
miRNA:   3'- ccCGGCGCGU-------------AUUACGCCaa-GgUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.