miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 26527 0.69 0.768695
Target:  5'- cGGGCgGCgGCGUGGagGUGGUggggaCCGCCg -3'
miRNA:   3'- -CCCGgCG-CGUAUUa-CGCCAa----GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 28258 0.66 0.914888
Target:  5'- -cGCCGCGCAaggAGcGCGGgccgcagcgcccccUUCCGCCc -3'
miRNA:   3'- ccCGGCGCGUa--UUaCGCC--------------AAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 28568 0.67 0.884866
Target:  5'- -cGCCGCGC---GUGCaGGUgcgCCAUCUg -3'
miRNA:   3'- ccCGGCGCGuauUACG-CCAa--GGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 29398 0.72 0.628991
Target:  5'- aGGGCCGCGCcg---GCGGgg-CGCCg -3'
miRNA:   3'- -CCCGGCGCGuauuaCGCCaagGUGGa -5'
5520 5' -55.9 NC_001798.1 + 29446 0.71 0.659684
Target:  5'- gGGGCgGCGCAugcUAAUGgGGUUCUuggaguacACCc -3'
miRNA:   3'- -CCCGgCGCGU---AUUACgCCAAGG--------UGGa -5'
5520 5' -55.9 NC_001798.1 + 31346 0.66 0.914303
Target:  5'- gGGGCgCGCGCAggcGcgGCGGgugggcgaagaCGCCg -3'
miRNA:   3'- -CCCG-GCGCGUa--UuaCGCCaag--------GUGGa -5'
5520 5' -55.9 NC_001798.1 + 32573 0.68 0.839454
Target:  5'- cGGGCCGCgGCccccgcGUGGagCCGCCg -3'
miRNA:   3'- -CCCGGCG-CGuauua-CGCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 34975 0.67 0.877827
Target:  5'- cGGCCGC-CGaGGUGCGGgggCC-CCUc -3'
miRNA:   3'- cCCGGCGcGUaUUACGCCaa-GGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 41177 0.66 0.920606
Target:  5'- cGGCCG-GCGUAGUucaaaagauaggucGcCGGggCCACCa -3'
miRNA:   3'- cCCGGCgCGUAUUA--------------C-GCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 43036 0.72 0.608527
Target:  5'- gGGGCCccggGCGCA-AAUGCGGcgcgugagCCGCCg -3'
miRNA:   3'- -CCCGG----CGCGUaUUACGCCaa------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 43530 0.67 0.84833
Target:  5'- cGGCCGCGUcucccgccaggGCGGUUUC-CCUg -3'
miRNA:   3'- cCCGGCGCGuauua------CGCCAAGGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 45192 0.66 0.916629
Target:  5'- gGGGCCguugcgGCGCAUcgggacaaGAUGCG---CCGCCUg -3'
miRNA:   3'- -CCCGG------CGCGUA--------UUACGCcaaGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 49643 0.71 0.669882
Target:  5'- uGGGCCGCGUacgccgagcagAUGAUGCGGccCgAUCUg -3'
miRNA:   3'- -CCCGGCGCG-----------UAUUACGCCaaGgUGGA- -5'
5520 5' -55.9 NC_001798.1 + 51474 0.67 0.847533
Target:  5'- cGGGCCGCGUGUcgggcccgGAgcugcagGCGGcaUUCCcCCUg -3'
miRNA:   3'- -CCCGGCGCGUA--------UUa------CGCC--AAGGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 52172 0.67 0.884866
Target:  5'- aGGCCGCGUu---UGCGGggCgCGuCCUg -3'
miRNA:   3'- cCCGGCGCGuauuACGCCaaG-GU-GGA- -5'
5520 5' -55.9 NC_001798.1 + 53890 0.66 0.910744
Target:  5'- aGGGCC-CGCGgagacguuUGCGcg-CCACCUg -3'
miRNA:   3'- -CCCGGcGCGUauu-----ACGCcaaGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 54387 0.69 0.796384
Target:  5'- gGGGCCgcgGCGCGgucgGCGGgagCUGCCg -3'
miRNA:   3'- -CCCGG---CGCGUauuaCGCCaa-GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 57401 0.68 0.805329
Target:  5'- cGGGCCaGCGgGUcGUgGCGGUUgCAUCg -3'
miRNA:   3'- -CCCGG-CGCgUAuUA-CGCCAAgGUGGa -5'
5520 5' -55.9 NC_001798.1 + 58697 0.73 0.547782
Target:  5'- aGGGCCGCgGCGgcgcgGgGGUcgaUCCACCa -3'
miRNA:   3'- -CCCGGCG-CGUauua-CgCCA---AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 61203 0.7 0.700257
Target:  5'- cGGCgCGCGCcg---GCGGUUgCACCa -3'
miRNA:   3'- cCCG-GCGCGuauuaCGCCAAgGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.