miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 130322 0.69 0.753464
Target:  5'- gGGuGUCGCGCAUGcgcacgaaaaauuuaGUGUGGUgUCGCCg -3'
miRNA:   3'- -CC-CGGCGCGUAU---------------UACGCCAaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 128585 0.7 0.730115
Target:  5'- uGGGCCGCGCGgac-GCGGgcgUCaacgacgaCGCCg -3'
miRNA:   3'- -CCCGGCGCGUauuaCGCCa--AG--------GUGGa -5'
5520 5' -55.9 NC_001798.1 + 127727 0.66 0.910744
Target:  5'- cGGCUGCuCGUAaaaAUGCGG--CCGCCg -3'
miRNA:   3'- cCCGGCGcGUAU---UACGCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 127633 0.7 0.730115
Target:  5'- aGGCCGCuGC-UGGUGCuGGUcucCCGCCUc -3'
miRNA:   3'- cCCGGCG-CGuAUUACG-CCAa--GGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 126923 0.66 0.908933
Target:  5'- uGGCgCGCGCcgugGUGuuccugaacaccagGUGCGGgaucagCCACCUg -3'
miRNA:   3'- cCCG-GCGCG----UAU--------------UACGCCaa----GGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 122627 0.72 0.628991
Target:  5'- cGGGCCGCGCuccaagGCGGcccgcgcaucUUCCagcGCCUg -3'
miRNA:   3'- -CCCGGCGCGuauua-CGCC----------AAGG---UGGA- -5'
5520 5' -55.9 NC_001798.1 + 121715 0.66 0.898268
Target:  5'- -cGCCGCGaCGgagGcgGCGGc-CCACCUg -3'
miRNA:   3'- ccCGGCGC-GUa--UuaCGCCaaGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 115030 0.66 0.902741
Target:  5'- aGGCCGUGCGgagccuggacgacGUGGgccgCCACCUg -3'
miRNA:   3'- cCCGGCGCGUauua---------CGCCaa--GGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 113480 0.68 0.831187
Target:  5'- gGGGuuGUGCGUGAUcauggGCGGcgCgGCCc -3'
miRNA:   3'- -CCCggCGCGUAUUA-----CGCCaaGgUGGa -5'
5520 5' -55.9 NC_001798.1 + 109803 0.66 0.921165
Target:  5'- cGGGCCGCGCuagcca-GGaccgaCCACCa -3'
miRNA:   3'- -CCCGGCGCGuauuacgCCaa---GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 109623 0.66 0.922275
Target:  5'- cGGCCGCGCGcUAAccGCcccgauGG-UCCGCCg -3'
miRNA:   3'- cCCGGCGCGU-AUUa-CG------CCaAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 106105 0.67 0.855416
Target:  5'- cGGcGCCGCgaccGCcgGGucUGCGGUUCCGgCg -3'
miRNA:   3'- -CC-CGGCG----CGuaUU--ACGCCAAGGUgGa -5'
5520 5' -55.9 NC_001798.1 + 105409 0.69 0.75921
Target:  5'- aGGGCCGcCGCGgcc-GCGGUgcgCUggGCCUg -3'
miRNA:   3'- -CCCGGC-GCGUauuaCGCCAa--GG--UGGA- -5'
5520 5' -55.9 NC_001798.1 + 103164 0.66 0.896316
Target:  5'- aGGGCCacguGCGCAaacagGGUGCGGUcgggcggaaccucgUCCcCCc -3'
miRNA:   3'- -CCCGG----CGCGUa----UUACGCCA--------------AGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 102112 0.69 0.75921
Target:  5'- uGGGUacgcgCGCGCAU-GUGCGccaGUUCCugCUg -3'
miRNA:   3'- -CCCG-----GCGCGUAuUACGC---CAAGGugGA- -5'
5520 5' -55.9 NC_001798.1 + 97638 0.73 0.537822
Target:  5'- cGGGCCGcCGCGgacGUGCGGgagCGCCg -3'
miRNA:   3'- -CCCGGC-GCGUau-UACGCCaagGUGGa -5'
5520 5' -55.9 NC_001798.1 + 96562 0.66 0.916629
Target:  5'- cGGCUGCaGaCGUAcgGCGGggacgUCCGCa- -3'
miRNA:   3'- cCCGGCG-C-GUAUuaCGCCa----AGGUGga -5'
5520 5' -55.9 NC_001798.1 + 96173 0.67 0.847533
Target:  5'- cGGCCGCGCccccgGccGCGGUUUCcgaGCCc -3'
miRNA:   3'- cCCGGCGCGua---UuaCGCCAAGG---UGGa -5'
5520 5' -55.9 NC_001798.1 + 91612 0.73 0.567867
Target:  5'- aGGCCGCGCuUAuggGCGGccggCCGCCc -3'
miRNA:   3'- cCCGGCGCGuAUua-CGCCaa--GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 90892 0.69 0.768695
Target:  5'- uGGGCggCGCGCAUGcuguacGCGuGUUCCACg- -3'
miRNA:   3'- -CCCG--GCGCGUAUua----CGC-CAAGGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.