miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 2965 0.7 0.710279
Target:  5'- gGGGCgCGUcgGCGUGcgGCGGggCgGCCg -3'
miRNA:   3'- -CCCG-GCG--CGUAUuaCGCCaaGgUGGa -5'
5520 5' -55.9 NC_001798.1 + 79950 0.7 0.730115
Target:  5'- uGGGCUGgGCGUccgGAgcgGCGGcgccgcgUCCGCCg -3'
miRNA:   3'- -CCCGGCgCGUA---UUa--CGCCa------AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 128585 0.7 0.730115
Target:  5'- uGGGCCGCGCGgac-GCGGgcgUCaacgacgaCGCCg -3'
miRNA:   3'- -CCCGGCGCGUauuaCGCCa--AG--------GUGGa -5'
5520 5' -55.9 NC_001798.1 + 86855 0.7 0.730115
Target:  5'- cGGCCGCGaCAagacccgGcgGCGGUcgcgcuuuUCCGCCg -3'
miRNA:   3'- cCCGGCGC-GUa------UuaCGCCA--------AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 127633 0.7 0.730115
Target:  5'- aGGCCGCuGC-UGGUGCuGGUcucCCGCCUc -3'
miRNA:   3'- cCCGGCG-CGuAUUACG-CCAa--GGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 130322 0.69 0.753464
Target:  5'- gGGuGUCGCGCAUGcgcacgaaaaauuuaGUGUGGUgUCGCCg -3'
miRNA:   3'- -CC-CGGCGCGUAU---------------UACGCCAaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 105409 0.69 0.75921
Target:  5'- aGGGCCGcCGCGgcc-GCGGUgcgCUggGCCUg -3'
miRNA:   3'- -CCCGGC-GCGUauuaCGCCAa--GG--UGGA- -5'
5520 5' -55.9 NC_001798.1 + 102112 0.69 0.75921
Target:  5'- uGGGUacgcgCGCGCAU-GUGCGccaGUUCCugCUg -3'
miRNA:   3'- -CCCG-----GCGCGUAuUACGC---CAAGGugGA- -5'
5520 5' -55.9 NC_001798.1 + 26527 0.69 0.768695
Target:  5'- cGGGCgGCgGCGUGGagGUGGUggggaCCGCCg -3'
miRNA:   3'- -CCCGgCG-CGUAUUa-CGCCAa----GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 90892 0.69 0.768695
Target:  5'- uGGGCggCGCGCAUGcuguacGCGuGUUCCACg- -3'
miRNA:   3'- -CCCG--GCGCGUAUua----CGC-CAAGGUGga -5'
5520 5' -55.9 NC_001798.1 + 131922 0.69 0.787291
Target:  5'- uGGGCCGCGUcgacgcguUGAUGCuGcgCCugCUg -3'
miRNA:   3'- -CCCGGCGCGu-------AUUACGcCaaGGugGA- -5'
5520 5' -55.9 NC_001798.1 + 4838 0.69 0.787291
Target:  5'- cGGGCCGCGCg----GCGGggCgACg- -3'
miRNA:   3'- -CCCGGCGCGuauuaCGCCaaGgUGga -5'
5520 5' -55.9 NC_001798.1 + 153031 0.69 0.787291
Target:  5'- cGGGcCCGCGCGgcggcgcGCGGUUggccggcgCCGCCc -3'
miRNA:   3'- -CCC-GGCGCGUauua---CGCCAA--------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 153823 0.69 0.787291
Target:  5'- cGGCagGCGCGgcGUGCGGggCCuCCg -3'
miRNA:   3'- cCCGg-CGCGUauUACGCCaaGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 24189 0.69 0.796384
Target:  5'- gGGGCCugGCGCAcgugGCGG--CCGCCg -3'
miRNA:   3'- -CCCGG--CGCGUauuaCGCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 54387 0.69 0.796384
Target:  5'- gGGGCCgcgGCGCGgucgGCGGgagCUGCCg -3'
miRNA:   3'- -CCCGG---CGCGUauuaCGCCaa-GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 57401 0.68 0.805329
Target:  5'- cGGGCCaGCGgGUcGUgGCGGUUgCAUCg -3'
miRNA:   3'- -CCCGG-CGCgUAuUA-CGCCAAgGUGGa -5'
5520 5' -55.9 NC_001798.1 + 130911 0.68 0.805329
Target:  5'- uGGGCCaGCugGC-UGAUGCGGUgggCCAgCa -3'
miRNA:   3'- -CCCGG-CG--CGuAUUACGCCAa--GGUgGa -5'
5520 5' -55.9 NC_001798.1 + 62459 0.68 0.814116
Target:  5'- uGGGCCGCGCG-AcgGCgcccGGUcgUCCuCCUc -3'
miRNA:   3'- -CCCGGCGCGUaUuaCG----CCA--AGGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 81728 0.68 0.814116
Target:  5'- -uGCCGCGCGUGc-GCaGGUcCCGCCg -3'
miRNA:   3'- ccCGGCGCGUAUuaCG-CCAaGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.