miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 62459 0.68 0.814116
Target:  5'- uGGGCCGCGCG-AcgGCgcccGGUcgUCCuCCUc -3'
miRNA:   3'- -CCCGGCGCGUaUuaCG----CCA--AGGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 65743 0.67 0.870569
Target:  5'- aGGGCCG-GCAUGAUgcugGCGGUgCCGg-- -3'
miRNA:   3'- -CCCGGCgCGUAUUA----CGCCAaGGUgga -5'
5520 5' -55.9 NC_001798.1 + 67297 0.71 0.666826
Target:  5'- cGGGCCcgagguuccgccgaGCGCcacgAcgGCGGUUCgGCCa -3'
miRNA:   3'- -CCCGG--------------CGCGua--UuaCGCCAAGgUGGa -5'
5520 5' -55.9 NC_001798.1 + 70563 0.71 0.68005
Target:  5'- cGGGCUGCGCAccacggcggcccUGggGcCGGUgcgcgUCCGCCa -3'
miRNA:   3'- -CCCGGCGCGU------------AUuaC-GCCA-----AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 72230 0.66 0.904623
Target:  5'- gGGGCCGUcgaGCAgc-UGCGGcccgcggUCCAgCUg -3'
miRNA:   3'- -CCCGGCG---CGUauuACGCCa------AGGUgGA- -5'
5520 5' -55.9 NC_001798.1 + 72687 0.66 0.916629
Target:  5'- uGGCCGU-CGUGcgGCGGgaaaUCCACg- -3'
miRNA:   3'- cCCGGCGcGUAUuaCGCCa---AGGUGga -5'
5520 5' -55.9 NC_001798.1 + 75539 0.66 0.910744
Target:  5'- uGGCguccaCGCGCAUGAgccugGCGGacguggCCGCCc -3'
miRNA:   3'- cCCG-----GCGCGUAUUa----CGCCaa----GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 77720 0.66 0.922275
Target:  5'- uGGGCCGCcgGCGUcgagGCGGcgCUggACCg -3'
miRNA:   3'- -CCCGGCG--CGUAuua-CGCCaaGG--UGGa -5'
5520 5' -55.9 NC_001798.1 + 79950 0.7 0.730115
Target:  5'- uGGGCUGgGCGUccgGAgcgGCGGcgccgcgUCCGCCg -3'
miRNA:   3'- -CCCGGCgCGUA---UUa--CGCCa------AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 81728 0.68 0.814116
Target:  5'- -uGCCGCGCGUGc-GCaGGUcCCGCCg -3'
miRNA:   3'- ccCGGCGCGUAUuaCG-CCAaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 82174 0.67 0.863097
Target:  5'- cGGCCGCGguUuccgccgcaGcgGCGGcagugCCGCCUu -3'
miRNA:   3'- cCCGGCGCguA---------UuaCGCCaa---GGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 85267 0.73 0.535837
Target:  5'- gGGGCCGCGCGcGAggcuucggggggGCGGgggccggggUCCGCCc -3'
miRNA:   3'- -CCCGGCGCGUaUUa-----------CGCCa--------AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 86097 0.66 0.891681
Target:  5'- cGGCUGCGCGccgccGCGGacgcCCGCCg -3'
miRNA:   3'- cCCGGCGCGUauua-CGCCaa--GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 86855 0.7 0.730115
Target:  5'- cGGCCGCGaCAagacccgGcgGCGGUcgcgcuuuUCCGCCg -3'
miRNA:   3'- cCCGGCGC-GUa------UuaCGCCA--------AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 89541 0.67 0.873498
Target:  5'- uGGCCGuCGUagAUGGUGCGGgugauguugaugcCCGCCa -3'
miRNA:   3'- cCCGGC-GCG--UAUUACGCCaa-----------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 90425 0.68 0.822738
Target:  5'- cGGCCGgGCuUGAgGCGGUaCCAgCCg -3'
miRNA:   3'- cCCGGCgCGuAUUaCGCCAaGGU-GGa -5'
5520 5' -55.9 NC_001798.1 + 90892 0.69 0.768695
Target:  5'- uGGGCggCGCGCAUGcuguacGCGuGUUCCACg- -3'
miRNA:   3'- -CCCG--GCGCGUAUua----CGC-CAAGGUGga -5'
5520 5' -55.9 NC_001798.1 + 91612 0.73 0.567867
Target:  5'- aGGCCGCGCuUAuggGCGGccggCCGCCc -3'
miRNA:   3'- cCCGGCGCGuAUua-CGCCaa--GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 96173 0.67 0.847533
Target:  5'- cGGCCGCGCccccgGccGCGGUUUCcgaGCCc -3'
miRNA:   3'- cCCGGCGCGua---UuaCGCCAAGG---UGGa -5'
5520 5' -55.9 NC_001798.1 + 96562 0.66 0.916629
Target:  5'- cGGCUGCaGaCGUAcgGCGGggacgUCCGCa- -3'
miRNA:   3'- cCCGGCG-C-GUAUuaCGCCa----AGGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.