miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 82174 0.67 0.863097
Target:  5'- cGGCCGCGguUuccgccgcaGcgGCGGcagugCCGCCUu -3'
miRNA:   3'- cCCGGCGCguA---------UuaCGCCaa---GGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 28568 0.67 0.884866
Target:  5'- -cGCCGCGC---GUGCaGGUgcgCCAUCUg -3'
miRNA:   3'- ccCGGCGCGuauUACG-CCAa--GGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 2222 0.67 0.884866
Target:  5'- cGGGCCcgaggcGCGCAgcgggccgaagGcgGCGGgcgcgCCGCCg -3'
miRNA:   3'- -CCCGG------CGCGUa----------UuaCGCCaa---GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 52172 0.67 0.884866
Target:  5'- aGGCCGCGUu---UGCGGggCgCGuCCUg -3'
miRNA:   3'- cCCGGCGCGuauuACGCCaaG-GU-GGA- -5'
5520 5' -55.9 NC_001798.1 + 34975 0.67 0.877827
Target:  5'- cGGCCGC-CGaGGUGCGGgggCC-CCUc -3'
miRNA:   3'- cCCGGCGcGUaUUACGCCaa-GGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 89541 0.67 0.873498
Target:  5'- uGGCCGuCGUagAUGGUGCGGgugauguugaugcCCGCCa -3'
miRNA:   3'- cCCGGC-GCG--UAUUACGCCaa-----------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 143380 0.67 0.870569
Target:  5'- aGGCCccacguGCGCGUccGGUGCGG-UCC-CCg -3'
miRNA:   3'- cCCGG------CGCGUA--UUACGCCaAGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 65743 0.67 0.870569
Target:  5'- aGGGCCG-GCAUGAUgcugGCGGUgCCGg-- -3'
miRNA:   3'- -CCCGGCgCGUAUUA----CGCCAaGGUgga -5'
5520 5' -55.9 NC_001798.1 + 23834 0.67 0.867605
Target:  5'- gGGGCgCGUGCuGUAcgGCGGgcugggcgacagCCGCCc -3'
miRNA:   3'- -CCCG-GCGCG-UAUuaCGCCaa----------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 130911 0.68 0.805329
Target:  5'- uGGGCCaGCugGC-UGAUGCGGUgggCCAgCa -3'
miRNA:   3'- -CCCGG-CG--CGuAUUACGCCAa--GGUgGa -5'
5520 5' -55.9 NC_001798.1 + 57401 0.68 0.805329
Target:  5'- cGGGCCaGCGgGUcGUgGCGGUUgCAUCg -3'
miRNA:   3'- -CCCGG-CGCgUAuUA-CGCCAAgGUGGa -5'
5520 5' -55.9 NC_001798.1 + 1587 0.68 0.814116
Target:  5'- gGGGCCgaaGCGCGUGcgcacGCGGUaCCGCa- -3'
miRNA:   3'- -CCCGG---CGCGUAUua---CGCCAaGGUGga -5'
5520 5' -55.9 NC_001798.1 + 5880 0.68 0.814116
Target:  5'- gGGGcCCGCGuCAUcccGCGGgcUCCGCCc -3'
miRNA:   3'- -CCC-GGCGC-GUAuuaCGCCa-AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 62459 0.68 0.814116
Target:  5'- uGGGCCGCGCG-AcgGCgcccGGUcgUCCuCCUc -3'
miRNA:   3'- -CCCGGCGCGUaUuaCG----CCA--AGGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 81728 0.68 0.814116
Target:  5'- -uGCCGCGCGUGc-GCaGGUcCCGCCg -3'
miRNA:   3'- ccCGGCGCGUAUuaCG-CCAaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 90425 0.68 0.822738
Target:  5'- cGGCCGgGCuUGAgGCGGUaCCAgCCg -3'
miRNA:   3'- cCCGGCgCGuAUUaCGCCAaGGU-GGa -5'
5520 5' -55.9 NC_001798.1 + 139546 0.68 0.831187
Target:  5'- aGGuGCCGCGCcUGcaGUGGUUCCgggacguggcgGCCUu -3'
miRNA:   3'- -CC-CGGCGCGuAUuaCGCCAAGG-----------UGGA- -5'
5520 5' -55.9 NC_001798.1 + 113480 0.68 0.831187
Target:  5'- gGGGuuGUGCGUGAUcauggGCGGcgCgGCCc -3'
miRNA:   3'- -CCCggCGCGUAUUA-----CGCCaaGgUGGa -5'
5520 5' -55.9 NC_001798.1 + 32573 0.68 0.839454
Target:  5'- cGGGCCGCgGCccccgcGUGGagCCGCCg -3'
miRNA:   3'- -CCCGGCG-CGuauua-CGCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 152748 0.68 0.839454
Target:  5'- cGGCgGCGCGcGAggcucUGCGuGUUCUGCCa -3'
miRNA:   3'- cCCGgCGCGUaUU-----ACGC-CAAGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.