miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 21720 0.67 0.862338
Target:  5'- -cGCCGCGCAgccggugugccccUGGUGCGGcggCgACCg -3'
miRNA:   3'- ccCGGCGCGU-------------AUUACGCCaa-GgUGGa -5'
5520 5' -55.9 NC_001798.1 + 151616 0.67 0.855416
Target:  5'- gGGGCCGgGCcgGggGCGuGgccgcgUCCAUCa -3'
miRNA:   3'- -CCCGGCgCGuaUuaCGC-Ca-----AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 106105 0.67 0.855416
Target:  5'- cGGcGCCGCgaccGCcgGGucUGCGGUUCCGgCg -3'
miRNA:   3'- -CC-CGGCG----CGuaUU--ACGCCAAGGUgGa -5'
5520 5' -55.9 NC_001798.1 + 134492 0.67 0.853072
Target:  5'- uGGCCGC-CAUucgcgacagcccccAGUGCGcGUccUCCGCCUc -3'
miRNA:   3'- cCCGGCGcGUA--------------UUACGC-CA--AGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 43530 0.67 0.84833
Target:  5'- cGGCCGCGUcucccgccaggGCGGUUUC-CCUg -3'
miRNA:   3'- cCCGGCGCGuauua------CGCCAAGGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 24827 0.67 0.847533
Target:  5'- gGGGaCCuGCGCGUGGccgGCGGcagcgaggCCGCCg -3'
miRNA:   3'- -CCC-GG-CGCGUAUUa--CGCCaa------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 51474 0.67 0.847533
Target:  5'- cGGGCCGCGUGUcgggcccgGAgcugcagGCGGcaUUCCcCCUg -3'
miRNA:   3'- -CCCGGCGCGUA--------UUa------CGCC--AAGGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 23667 0.67 0.847533
Target:  5'- cGGGcCCGCGCg----GCGGUggCCgGCCg -3'
miRNA:   3'- -CCC-GGCGCGuauuaCGCCAa-GG-UGGa -5'
5520 5' -55.9 NC_001798.1 + 96173 0.67 0.847533
Target:  5'- cGGCCGCGCccccgGccGCGGUUUCcgaGCCc -3'
miRNA:   3'- cCCGGCGCGua---UuaCGCCAAGG---UGGa -5'
5520 5' -55.9 NC_001798.1 + 152748 0.68 0.839454
Target:  5'- cGGCgGCGCGcGAggcucUGCGuGUUCUGCCa -3'
miRNA:   3'- cCCGgCGCGUaUU-----ACGC-CAAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 32573 0.68 0.839454
Target:  5'- cGGGCCGCgGCccccgcGUGGagCCGCCg -3'
miRNA:   3'- -CCCGGCG-CGuauua-CGCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 113480 0.68 0.831187
Target:  5'- gGGGuuGUGCGUGAUcauggGCGGcgCgGCCc -3'
miRNA:   3'- -CCCggCGCGUAUUA-----CGCCaaGgUGGa -5'
5520 5' -55.9 NC_001798.1 + 139546 0.68 0.831187
Target:  5'- aGGuGCCGCGCcUGcaGUGGUUCCgggacguggcgGCCUu -3'
miRNA:   3'- -CC-CGGCGCGuAUuaCGCCAAGG-----------UGGA- -5'
5520 5' -55.9 NC_001798.1 + 90425 0.68 0.822738
Target:  5'- cGGCCGgGCuUGAgGCGGUaCCAgCCg -3'
miRNA:   3'- cCCGGCgCGuAUUaCGCCAaGGU-GGa -5'
5520 5' -55.9 NC_001798.1 + 1587 0.68 0.814116
Target:  5'- gGGGCCgaaGCGCGUGcgcacGCGGUaCCGCa- -3'
miRNA:   3'- -CCCGG---CGCGUAUua---CGCCAaGGUGga -5'
5520 5' -55.9 NC_001798.1 + 5880 0.68 0.814116
Target:  5'- gGGGcCCGCGuCAUcccGCGGgcUCCGCCc -3'
miRNA:   3'- -CCC-GGCGC-GUAuuaCGCCa-AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 62459 0.68 0.814116
Target:  5'- uGGGCCGCGCG-AcgGCgcccGGUcgUCCuCCUc -3'
miRNA:   3'- -CCCGGCGCGUaUuaCG----CCA--AGGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 81728 0.68 0.814116
Target:  5'- -uGCCGCGCGUGc-GCaGGUcCCGCCg -3'
miRNA:   3'- ccCGGCGCGUAUuaCG-CCAaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 57401 0.68 0.805329
Target:  5'- cGGGCCaGCGgGUcGUgGCGGUUgCAUCg -3'
miRNA:   3'- -CCCGG-CGCgUAuUA-CGCCAAgGUGGa -5'
5520 5' -55.9 NC_001798.1 + 130911 0.68 0.805329
Target:  5'- uGGGCCaGCugGC-UGAUGCGGUgggCCAgCa -3'
miRNA:   3'- -CCCGG-CG--CGuAUUACGCCAa--GGUgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.