miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 153823 0.69 0.787291
Target:  5'- cGGCagGCGCGgcGUGCGGggCCuCCg -3'
miRNA:   3'- cCCGg-CGCGUauUACGCCaaGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 153031 0.69 0.787291
Target:  5'- cGGGcCCGCGCGgcggcgcGCGGUUggccggcgCCGCCc -3'
miRNA:   3'- -CCC-GGCGCGUauua---CGCCAA--------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 152748 0.68 0.839454
Target:  5'- cGGCgGCGCGcGAggcucUGCGuGUUCUGCCa -3'
miRNA:   3'- cCCGgCGCGUaUU-----ACGC-CAAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 151616 0.67 0.855416
Target:  5'- gGGGCCGgGCcgGggGCGuGgccgcgUCCAUCa -3'
miRNA:   3'- -CCCGGCgCGuaUuaCGC-Ca-----AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 150631 0.72 0.618754
Target:  5'- uGGGCCGCGCGgggcugucucGCGGggggcguccugcccUCCGCCg -3'
miRNA:   3'- -CCCGGCGCGUauua------CGCCa-------------AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 150579 0.66 0.898268
Target:  5'- gGGGCgGCGCGgagAcgGCGGgggagagUCGCUg -3'
miRNA:   3'- -CCCGgCGCGUa--UuaCGCCaa-----GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 150346 0.73 0.527926
Target:  5'- cGGGgCGCGCG--GUGCGcgUCCACCg -3'
miRNA:   3'- -CCCgGCGCGUauUACGCcaAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 149477 0.66 0.910744
Target:  5'- gGGGCCGCgGCccgcaGCaGG-UCCGCCa -3'
miRNA:   3'- -CCCGGCG-CGuauuaCG-CCaAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 149421 0.66 0.921721
Target:  5'- gGGGCCucacgcaguugcGCGCGUGcucggggagcaggGUGCGGcggcUCCACg- -3'
miRNA:   3'- -CCCGG------------CGCGUAU-------------UACGCCa---AGGUGga -5'
5520 5' -55.9 NC_001798.1 + 148437 0.66 0.904623
Target:  5'- uGGGCaCGgGCGUaAGUGCGGgugcaUGCCUc -3'
miRNA:   3'- -CCCG-GCgCGUA-UUACGCCaag--GUGGA- -5'
5520 5' -55.9 NC_001798.1 + 148196 0.67 0.863097
Target:  5'- uGGGCCGUGUgguGUGGUGUGGUg-UugCg -3'
miRNA:   3'- -CCCGGCGCG---UAUUACGCCAagGugGa -5'
5520 5' -55.9 NC_001798.1 + 147254 0.78 0.305117
Target:  5'- cGGGCCGCGCcgGcgGCGuUUCCGCg- -3'
miRNA:   3'- -CCCGGCGCGuaUuaCGCcAAGGUGga -5'
5520 5' -55.9 NC_001798.1 + 146427 0.66 0.898268
Target:  5'- -aGCCGgGCAgAGUGCGGagCCcCCg -3'
miRNA:   3'- ccCGGCgCGUaUUACGCCaaGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 143380 0.67 0.870569
Target:  5'- aGGCCccacguGCGCGUccGGUGCGG-UCC-CCg -3'
miRNA:   3'- cCCGG------CGCGUA--UUACGCCaAGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 139546 0.68 0.831187
Target:  5'- aGGuGCCGCGCcUGcaGUGGUUCCgggacguggcgGCCUu -3'
miRNA:   3'- -CC-CGGCGCGuAUuaCGCCAAGG-----------UGGA- -5'
5520 5' -55.9 NC_001798.1 + 137989 0.66 0.922275
Target:  5'- uGGGCgCGcCGCAgcucGCGGUcgCgCGCCUg -3'
miRNA:   3'- -CCCG-GC-GCGUauuaCGCCAa-G-GUGGA- -5'
5520 5' -55.9 NC_001798.1 + 134492 0.67 0.853072
Target:  5'- uGGCCGC-CAUucgcgacagcccccAGUGCGcGUccUCCGCCUc -3'
miRNA:   3'- cCCGGCGcGUA--------------UUACGC-CA--AGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 131922 0.69 0.787291
Target:  5'- uGGGCCGCGUcgacgcguUGAUGCuGcgCCugCUg -3'
miRNA:   3'- -CCCGGCGCGu-------AUUACGcCaaGGugGA- -5'
5520 5' -55.9 NC_001798.1 + 131566 0.66 0.922275
Target:  5'- cGGCCcgGUGCGUAAcUGUGG-UCCGCg- -3'
miRNA:   3'- cCCGG--CGCGUAUU-ACGCCaAGGUGga -5'
5520 5' -55.9 NC_001798.1 + 130911 0.68 0.805329
Target:  5'- uGGGCCaGCugGC-UGAUGCGGUgggCCAgCa -3'
miRNA:   3'- -CCCGG-CG--CGuAUUACGCCAa--GGUgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.