miRNA display CGI


Results 81 - 100 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 95375 0.67 0.591918
Target:  5'- uGCGGAgGGCGgggCGgcggUCGCCaGCaGCg -3'
miRNA:   3'- gCGCCUgCCGCa--GCag--AGCGG-CGcCG- -5'
5521 3' -62.4 NC_001798.1 + 154055 0.67 0.591918
Target:  5'- gCGCGGcACGGC--UGgagCGCCGgGGCg -3'
miRNA:   3'- -GCGCC-UGCCGcaGCagaGCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 28990 0.67 0.590006
Target:  5'- aGgGGGCGGCGcCGgccaaccgcgCGCCGCcGCg -3'
miRNA:   3'- gCgCCUGCCGCaGCaga-------GCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 90859 0.68 0.582369
Target:  5'- gGCGuGAUGGCGUCcauaaaUCGCUcguggagcuggGCGGCg -3'
miRNA:   3'- gCGC-CUGCCGCAGcag---AGCGG-----------CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 53108 0.68 0.582369
Target:  5'- gGCGcGCGGCG-CGagCUCcCUGCGGCu -3'
miRNA:   3'- gCGCcUGCCGCaGCa-GAGcGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 47637 0.68 0.582369
Target:  5'- gGCGGAcccagagagucCGcGCGaCGaCUucCGCCGCGGCg -3'
miRNA:   3'- gCGCCU-----------GC-CGCaGCaGA--GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 26936 0.68 0.582369
Target:  5'- gGCGGGCGGgGUCGggCggGCgGgGGUc -3'
miRNA:   3'- gCGCCUGCCgCAGCa-GagCGgCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 104727 0.68 0.572851
Target:  5'- aGCGGuacuGCgGGCGUCcgcUCUCGucgccgauuaCCGCGGCc -3'
miRNA:   3'- gCGCC----UG-CCGCAGc--AGAGC----------GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 144325 0.68 0.572851
Target:  5'- gGCagGGGCGGCGUCGcaUCGCCcgacagccccaGgGGCu -3'
miRNA:   3'- gCG--CCUGCCGCAGCagAGCGG-----------CgCCG- -5'
5521 3' -62.4 NC_001798.1 + 5389 0.68 0.572851
Target:  5'- cCGUGG-CGGCGgccCGUUggucgCGCCGCcGCc -3'
miRNA:   3'- -GCGCCuGCCGCa--GCAGa----GCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 102747 0.68 0.563371
Target:  5'- -aCGGACGGCGaccugCGgcgCgggaaCGCuCGCGGCg -3'
miRNA:   3'- gcGCCUGCCGCa----GCa--Ga----GCG-GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 32035 0.68 0.553933
Target:  5'- cCGCGGccACGG-GcCG-CUCGCCcCGGCg -3'
miRNA:   3'- -GCGCC--UGCCgCaGCaGAGCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 105203 0.68 0.553933
Target:  5'- cCGCGGugGGCGaCGgcgCUgcccCGuCCGCaGCg -3'
miRNA:   3'- -GCGCCugCCGCaGCa--GA----GC-GGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 28791 0.68 0.553933
Target:  5'- gGCGGcgGCGGCGcgCGggucCUccgcCGCCGCGGg -3'
miRNA:   3'- gCGCC--UGCCGCa-GCa---GA----GCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 2115 0.68 0.553933
Target:  5'- gCGCGGcccGCGGCcagGUcCUCGCC-CGGCa -3'
miRNA:   3'- -GCGCC---UGCCGcagCA-GAGCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 4779 0.68 0.552051
Target:  5'- gGCGG-CGGCGUCGUCggccUCGUCuucguucuccucCGGCc -3'
miRNA:   3'- gCGCCuGCCGCAGCAG----AGCGGc-----------GCCG- -5'
5521 3' -62.4 NC_001798.1 + 107406 0.68 0.544543
Target:  5'- gGCGGGaggacuggggcCGGCuGaCGggggUCGCCGCGGCg -3'
miRNA:   3'- gCGCCU-----------GCCG-CaGCag--AGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 43473 0.68 0.544543
Target:  5'- aCGCGGG-GGCGggCGUgagggcCGCCGgGGCa -3'
miRNA:   3'- -GCGCCUgCCGCa-GCAga----GCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 47789 0.68 0.535205
Target:  5'- cCGCGcGACcGCGUCGUUcggcgucCGUCGCGGg -3'
miRNA:   3'- -GCGC-CUGcCGCAGCAGa------GCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 2612 0.68 0.535205
Target:  5'- gCGCGGGgcgccgccCGGCGgCGccCUgGCCGgGGCg -3'
miRNA:   3'- -GCGCCU--------GCCGCaGCa-GAgCGGCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.