miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 25713 0.67 0.630313
Target:  5'- gGCGGGCaacuggaccGGCGcccccgaCGUCUCGgCGCugGGCg -3'
miRNA:   3'- gCGCCUG---------CCGCa------GCAGAGCgGCG--CCG- -5'
5521 3' -62.4 NC_001798.1 + 28352 0.67 0.620696
Target:  5'- gCGCcGGCGGCGgccccccgCGUCccCGCcCGCGGa -3'
miRNA:   3'- -GCGcCUGCCGCa-------GCAGa-GCG-GCGCCg -5'
5521 3' -62.4 NC_001798.1 + 51471 0.67 0.620696
Target:  5'- uCGCGGGCcGCGU-GUCggGCCcggagcugcagGCGGCa -3'
miRNA:   3'- -GCGCCUGcCGCAgCAGagCGG-----------CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 74403 0.67 0.620696
Target:  5'- cCGUGGcgcCGGCGgaccUGaC-CGCCGCGGCc -3'
miRNA:   3'- -GCGCCu--GCCGCa---GCaGaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 113635 0.67 0.619735
Target:  5'- gCGCGGcCGGCGcCGcCaugugggUgGCgGCGGCg -3'
miRNA:   3'- -GCGCCuGCCGCaGCaG-------AgCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 3271 0.67 0.612047
Target:  5'- gGCGGGCaccgcGCGcUCGUCggccggcgacgccgcCGCCGaCGGCa -3'
miRNA:   3'- gCGCCUGc----CGC-AGCAGa--------------GCGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 25261 0.67 0.611087
Target:  5'- gGCGGcUGGCGcCGcCagcCGCCGgGGCc -3'
miRNA:   3'- gCGCCuGCCGCaGCaGa--GCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 67290 0.67 0.611087
Target:  5'- uCGCGGACGGgccCGagGUUcCGCCGagcgccacgaCGGCg -3'
miRNA:   3'- -GCGCCUGCC---GCagCAGaGCGGC----------GCCG- -5'
5521 3' -62.4 NC_001798.1 + 70286 0.67 0.611087
Target:  5'- cCGCcacGGCGGCGUuucuguUGUCgggCGCgGCGGUc -3'
miRNA:   3'- -GCGc--CUGCCGCA------GCAGa--GCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 154079 0.67 0.611087
Target:  5'- nCGCGGcACGGC--UGgagCGCCGgGGCg -3'
miRNA:   3'- -GCGCC-UGCCGcaGCagaGCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 30822 0.67 0.611087
Target:  5'- cCGCGGACGGCcccgCGcUCccugUCGCUGgGGg -3'
miRNA:   3'- -GCGCCUGCCGca--GC-AG----AGCGGCgCCg -5'
5521 3' -62.4 NC_001798.1 + 1138 0.67 0.601492
Target:  5'- uCGCGccucGGCGGCGUgGcCagCcCCGCGGCg -3'
miRNA:   3'- -GCGC----CUGCCGCAgCaGa-GcGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 11602 0.67 0.601492
Target:  5'- gCGUGGAauugGGCGgggcuaUCUCGCCGCucgcgGGCg -3'
miRNA:   3'- -GCGCCUg---CCGCagc---AGAGCGGCG-----CCG- -5'
5521 3' -62.4 NC_001798.1 + 53653 0.67 0.601492
Target:  5'- cCGCGG-UGGCGggGUUgCGCgaCGCGGCc -3'
miRNA:   3'- -GCGCCuGCCGCagCAGaGCG--GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 78555 0.67 0.601492
Target:  5'- gGCGGGCcuGCGggaggCG-CUgGCCGCGcGCg -3'
miRNA:   3'- gCGCCUGc-CGCa----GCaGAgCGGCGC-CG- -5'
5521 3' -62.4 NC_001798.1 + 95699 0.67 0.601492
Target:  5'- gGCGGcCGGCGUCGcC-CGaaaGCGGg -3'
miRNA:   3'- gCGCCuGCCGCAGCaGaGCgg-CGCCg -5'
5521 3' -62.4 NC_001798.1 + 3972 0.67 0.601492
Target:  5'- cCGCGu-CGGCGUCcagCUCGaCCGCcggGGCc -3'
miRNA:   3'- -GCGCcuGCCGCAGca-GAGC-GGCG---CCG- -5'
5521 3' -62.4 NC_001798.1 + 95375 0.67 0.591918
Target:  5'- uGCGGAgGGCGgggCGgcggUCGCCaGCaGCg -3'
miRNA:   3'- gCGCCUgCCGCa--GCag--AGCGG-CGcCG- -5'
5521 3' -62.4 NC_001798.1 + 90400 0.67 0.591918
Target:  5'- gCGCGGuugggcCGGCG-CG-UUC-CCGCGGCc -3'
miRNA:   3'- -GCGCCu-----GCCGCaGCaGAGcGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 36279 0.67 0.591918
Target:  5'- gGUGGGCGGCGggGgggggUGCCGUGGg -3'
miRNA:   3'- gCGCCUGCCGCagCaga--GCGGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.