miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 32035 0.68 0.553933
Target:  5'- cCGCGGccACGG-GcCG-CUCGCCcCGGCg -3'
miRNA:   3'- -GCGCC--UGCCgCaGCaGAGCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 32064 0.7 0.420384
Target:  5'- cCGCGGGCGccGCGcccccgucggCGUCUCcgucgucccagGCCGCGGUc -3'
miRNA:   3'- -GCGCCUGC--CGCa---------GCAGAG-----------CGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 34575 0.71 0.404053
Target:  5'- gGCGGACGGC-UCacg-CGgCGCGGCg -3'
miRNA:   3'- gCGCCUGCCGcAGcagaGCgGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 35279 0.74 0.276247
Target:  5'- aCGCGGGCGGgGcUCGggCUCuCCGgCGGCu -3'
miRNA:   3'- -GCGCCUGCCgC-AGCa-GAGcGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 35435 0.75 0.230709
Target:  5'- gGCGGGaGGCGUgGgccgCUggCGCCGCGGCc -3'
miRNA:   3'- gCGCCUgCCGCAgCa---GA--GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 35535 0.67 0.630313
Target:  5'- cCGCGGcCGGCG-CGgggCgUUGCCGgccCGGCc -3'
miRNA:   3'- -GCGCCuGCCGCaGCa--G-AGCGGC---GCCG- -5'
5521 3' -62.4 NC_001798.1 + 35813 0.69 0.516703
Target:  5'- gGgGGGgGGCGUCGggaCUCGCgGagGGCc -3'
miRNA:   3'- gCgCCUgCCGCAGCa--GAGCGgCg-CCG- -5'
5521 3' -62.4 NC_001798.1 + 36103 0.73 0.306868
Target:  5'- gGUGGugGGgGggggcccggcugCGUCUCGCCGCGa- -3'
miRNA:   3'- gCGCCugCCgCa-----------GCAGAGCGGCGCcg -5'
5521 3' -62.4 NC_001798.1 + 36279 0.67 0.591918
Target:  5'- gGUGGGCGGCGggGgggggUGCCGUGGg -3'
miRNA:   3'- gCGCCUGCCGCagCaga--GCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 36305 0.66 0.6878
Target:  5'- gGUGuGGCGGCGgggCG-CggGCCGgGGCc -3'
miRNA:   3'- gCGC-CUGCCGCa--GCaGagCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 36426 0.72 0.335737
Target:  5'- gGCGGugGgGCGggGUCgggGUCGCGGCg -3'
miRNA:   3'- gCGCCugC-CGCagCAGag-CGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 36503 0.73 0.301589
Target:  5'- aCGCGGGCGGCcgggCGggggCgCGCgGCGGCc -3'
miRNA:   3'- -GCGCCUGCCGca--GCa---GaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 36544 0.66 0.649542
Target:  5'- gCGCGcGGCGGCcgggCGggggCgCGCgGCGGCc -3'
miRNA:   3'- -GCGC-CUGCCGca--GCa---GaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 36586 0.66 0.649542
Target:  5'- gCGCGcGGCGGCcgggCGggggCgCGCgGCGGCc -3'
miRNA:   3'- -GCGC-CUGCCGca--GCa---GaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 39467 0.66 0.678278
Target:  5'- aGCGGAgggggggccUGGCG-CGUgcCUCgugGCCGCGGg -3'
miRNA:   3'- gCGCCU---------GCCGCaGCA--GAG---CGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 39630 0.66 0.706712
Target:  5'- gGCGGGguuuUGGUGUggaGUCggcgcCGCCGgGGCc -3'
miRNA:   3'- gCGCCU----GCCGCAg--CAGa----GCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 39819 0.71 0.395244
Target:  5'- uCGCGGGUGGCGgaUCGUCggcucccCGCCGCgcugccgGGCg -3'
miRNA:   3'- -GCGCCUGCCGC--AGCAGa------GCGGCG-------CCG- -5'
5521 3' -62.4 NC_001798.1 + 40001 0.66 0.649542
Target:  5'- uGuCGGAcuCGGgGUCG--UCGCgGCGGCc -3'
miRNA:   3'- gC-GCCU--GCCgCAGCagAGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 41175 0.72 0.335737
Target:  5'- uGCGGcCGGCGUaGUUcaaaagauaggUCGCCGgGGCc -3'
miRNA:   3'- gCGCCuGCCGCAgCAG-----------AGCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 41522 0.69 0.507549
Target:  5'- aCGaGGGCGGUaUCGUUgugCGCCcCGGCg -3'
miRNA:   3'- -GCgCCUGCCGcAGCAGa--GCGGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.