miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 23002 1.11 0.000712
Target:  5'- cCGCGGACGGCGUCGUCUCGCCGCGGCa -3'
miRNA:   3'- -GCGCCUGCCGCAGCAGAGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 24415 0.71 0.412169
Target:  5'- gGCGG-CGGCGUCGcCggccgacgaGCgCGCGGUg -3'
miRNA:   3'- gCGCCuGCCGCAGCaGag-------CG-GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 24450 0.67 0.591918
Target:  5'- cCGcCGGcuACGGCGccgCGggggugCUCGCCGCccuggGGCg -3'
miRNA:   3'- -GC-GCC--UGCCGCa--GCa-----GAGCGGCG-----CCG- -5'
5521 3' -62.4 NC_001798.1 + 24837 0.71 0.412169
Target:  5'- gCGUGGcCGGCGgcagCGaggC-CGCCGUGGCc -3'
miRNA:   3'- -GCGCCuGCCGCa---GCa--GaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 25261 0.67 0.611087
Target:  5'- gGCGGcUGGCGcCGcCagcCGCCGgGGCc -3'
miRNA:   3'- gCGCCuGCCGCaGCaGa--GCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 25713 0.67 0.630313
Target:  5'- gGCGGGCaacuggaccGGCGcccccgaCGUCUCGgCGCugGGCg -3'
miRNA:   3'- gCGCCUG---------CCGCa------GCAGAGCgGCG--CCG- -5'
5521 3' -62.4 NC_001798.1 + 25874 0.72 0.355318
Target:  5'- cCGCGGACuGGCccgccgacgggcccGUgGUCUCGCgGCaGCa -3'
miRNA:   3'- -GCGCCUG-CCG--------------CAgCAGAGCGgCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 26355 0.7 0.437108
Target:  5'- gGCGGccCGGCGgagcugCG-CggGCCGCGGCg -3'
miRNA:   3'- gCGCCu-GCCGCa-----GCaGagCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 26525 0.75 0.245326
Target:  5'- gGCGGGCGGCGgCGUggaggugguggggaC-CGCCGCGGg -3'
miRNA:   3'- gCGCCUGCCGCaGCA--------------GaGCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 26936 0.68 0.582369
Target:  5'- gGCGGGCGGgGUCGggCggGCgGgGGUc -3'
miRNA:   3'- gCGCCUGCCgCAGCa-GagCGgCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 27040 0.74 0.282419
Target:  5'- gGCGGGCGGCa-CGUCUC-CCGCGcccGCg -3'
miRNA:   3'- gCGCCUGCCGcaGCAGAGcGGCGC---CG- -5'
5521 3' -62.4 NC_001798.1 + 28352 0.67 0.620696
Target:  5'- gCGCcGGCGGCGgccccccgCGUCccCGCcCGCGGa -3'
miRNA:   3'- -GCGcCUGCCGCa-------GCAGa-GCG-GCGCCg -5'
5521 3' -62.4 NC_001798.1 + 28791 0.68 0.553933
Target:  5'- gGCGGcgGCGGCGcgCGggucCUccgcCGCCGCGGg -3'
miRNA:   3'- gCGCC--UGCCGCa-GCa---GA----GCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 28990 0.67 0.590006
Target:  5'- aGgGGGCGGCGcCGgccaaccgcgCGCCGCcGCg -3'
miRNA:   3'- gCgCCUGCCGCaGCaga-------GCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 29800 0.7 0.454207
Target:  5'- gGCGGAcccCGGCcccgagCGgC-CGCCGCGGCa -3'
miRNA:   3'- gCGCCU---GCCGca----GCaGaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 30822 0.67 0.611087
Target:  5'- cCGCGGACGGCcccgCGcUCccugUCGCUGgGGg -3'
miRNA:   3'- -GCGCCUGCCGca--GC-AG----AGCGGCgCCg -5'
5521 3' -62.4 NC_001798.1 + 31150 0.66 0.706712
Target:  5'- gCGgGGGCGGCGgugCGggggCGacCCGCGGa -3'
miRNA:   3'- -GCgCCUGCCGCa--GCaga-GC--GGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 31255 0.66 0.654344
Target:  5'- uGCGGGCGGgGgugggaucuggGUCUgggggcggcccugcCGUCGCGGCc -3'
miRNA:   3'- gCGCCUGCCgCag---------CAGA--------------GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 31363 0.7 0.420384
Target:  5'- gGCgGGugGGCGaaGa--CGCCGCGGCg -3'
miRNA:   3'- gCG-CCugCCGCagCagaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 31543 0.66 0.685898
Target:  5'- cCGgGGGgGGaggucugccacaGUCGUCggggcgCGCCGCGcGCc -3'
miRNA:   3'- -GCgCCUgCCg-----------CAGCAGa-----GCGGCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.