miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 39819 0.71 0.395244
Target:  5'- uCGCGGGUGGCGgaUCGUCggcucccCGCCGCgcugccgGGCg -3'
miRNA:   3'- -GCGCCUGCCGC--AGCAGa------GCGGCG-------CCG- -5'
5521 3' -62.4 NC_001798.1 + 97645 0.71 0.396039
Target:  5'- cCGCGGACGuGCGggag--CGCCGgCGGCu -3'
miRNA:   3'- -GCGCCUGC-CGCagcagaGCGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 121471 0.71 0.403247
Target:  5'- gCGCGGGCGGgcUGuUCGUCUCccugccgGUCGCGuGCg -3'
miRNA:   3'- -GCGCCUGCC--GC-AGCAGAG-------CGGCGC-CG- -5'
5521 3' -62.4 NC_001798.1 + 34575 0.71 0.404053
Target:  5'- gGCGGACGGC-UCacg-CGgCGCGGCg -3'
miRNA:   3'- gCGCCUGCCGcAGcagaGCgGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 24837 0.71 0.412169
Target:  5'- gCGUGGcCGGCGgcagCGaggC-CGCCGUGGCc -3'
miRNA:   3'- -GCGCCuGCCGCa---GCa--GaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2519 0.71 0.412169
Target:  5'- cCGCGGcgGCGGCGUCGgcggggCggggGgCGCGGCc -3'
miRNA:   3'- -GCGCC--UGCCGCAGCa-----Gag--CgGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 24415 0.71 0.412169
Target:  5'- gGCGG-CGGCGUCGcCggccgacgaGCgCGCGGUg -3'
miRNA:   3'- gCGCCuGCCGCAGCaGag-------CG-GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 43514 0.7 0.420384
Target:  5'- gCGCGcagguaGGCGGCGgccgCGUCUC-CCGCcagGGCg -3'
miRNA:   3'- -GCGC------CUGCCGCa---GCAGAGcGGCG---CCG- -5'
5521 3' -62.4 NC_001798.1 + 32064 0.7 0.420384
Target:  5'- cCGCGGGCGccGCGcccccgucggCGUCUCcgucgucccagGCCGCGGUc -3'
miRNA:   3'- -GCGCCUGC--CGCa---------GCAGAG-----------CGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 31363 0.7 0.420384
Target:  5'- gGCgGGugGGCGaaGa--CGCCGCGGCg -3'
miRNA:   3'- gCG-CCugCCGCagCagaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 9148 0.7 0.428698
Target:  5'- aCGCGGgcGCGGCGcCGcCcgCGCCGgGGg -3'
miRNA:   3'- -GCGCC--UGCCGCaGCaGa-GCGGCgCCg -5'
5521 3' -62.4 NC_001798.1 + 126366 0.7 0.437108
Target:  5'- gCGCGGGacugucccgaUGGCGagugagccgcUCGUCUCGUCGCcGCu -3'
miRNA:   3'- -GCGCCU----------GCCGC----------AGCAGAGCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 26355 0.7 0.437108
Target:  5'- gGCGGccCGGCGgagcugCG-CggGCCGCGGCg -3'
miRNA:   3'- gCGCCu-GCCGCa-----GCaGagCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 4048 0.7 0.443051
Target:  5'- gCGCGGGCccGGCGgCGcUCcaggcggcccgcggUCGCCGCGGg -3'
miRNA:   3'- -GCGCCUG--CCGCaGC-AG--------------AGCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 2572 0.7 0.445612
Target:  5'- cCGCgGGGCGGgGggCGUC-CGC-GCGGCu -3'
miRNA:   3'- -GCG-CCUGCCgCa-GCAGaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 149244 0.7 0.445612
Target:  5'- cCGCGGG-GGCGUCGcCggcCGgCGCGGg -3'
miRNA:   3'- -GCGCCUgCCGCAGCaGa--GCgGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 29800 0.7 0.454207
Target:  5'- gGCGGAcccCGGCcccgagCGgC-CGCCGCGGCa -3'
miRNA:   3'- gCGCCU---GCCGca----GCaGaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 134940 0.7 0.454207
Target:  5'- gCGCGuGACcuGGUG-CGgggCGCCGCGGCc -3'
miRNA:   3'- -GCGC-CUG--CCGCaGCagaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 15508 0.7 0.454207
Target:  5'- gGUGGGgGGCGU--UUUCGCUGCGGa -3'
miRNA:   3'- gCGCCUgCCGCAgcAGAGCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 98581 0.7 0.454207
Target:  5'- cCGCGG-UGGCGUCGgCg-GCCcCGGCg -3'
miRNA:   3'- -GCGCCuGCCGCAGCaGagCGGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.