miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 153797 0.7 0.462892
Target:  5'- gCGCGG-CGGCGgCGgggggCagGCgGCGGCa -3'
miRNA:   3'- -GCGCCuGCCGCaGCa----GagCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 153079 0.7 0.462892
Target:  5'- gGCGGAgCGGCGgggCGg--CGCCG-GGCc -3'
miRNA:   3'- gCGCCU-GCCGCa--GCagaGCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 149397 0.7 0.462892
Target:  5'- aCGCGGGgGGCGUCGgguaGUCGgGGg -3'
miRNA:   3'- -GCGCCUgCCGCAGCagagCGGCgCCg -5'
5521 3' -62.4 NC_001798.1 + 116328 0.7 0.471663
Target:  5'- aCGCGGGgGGgcaCGagccCGUCUaCGCgGCGGCg -3'
miRNA:   3'- -GCGCCUgCC---GCa---GCAGA-GCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 4195 0.69 0.480518
Target:  5'- cCGCccGCGGCGUgGUCUgCGgCGCuGGCg -3'
miRNA:   3'- -GCGccUGCCGCAgCAGA-GCgGCG-CCG- -5'
5521 3' -62.4 NC_001798.1 + 154407 0.69 0.480518
Target:  5'- gGCGGGCGGCGgCGgCggGCgGgCGGCa -3'
miRNA:   3'- gCGCCUGCCGCaGCaGagCGgC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 16070 0.69 0.480518
Target:  5'- uGgGGGCGGCGggCGUCU-GUgGgGGCa -3'
miRNA:   3'- gCgCCUGCCGCa-GCAGAgCGgCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 69 0.69 0.480518
Target:  5'- gGCGGGCGGCGgCGgCggGCgGgCGGCa -3'
miRNA:   3'- gCGCCUGCCGCaGCaGagCGgC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 1480 0.69 0.489452
Target:  5'- gCGcCGGGCgccauGGCGUCGcCcgCGCCcgagGCGGCg -3'
miRNA:   3'- -GC-GCCUG-----CCGCAGCaGa-GCGG----CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 54660 0.69 0.489452
Target:  5'- aGCGGccggcagccGCGGCG-CGcC-CGCuCGCGGCu -3'
miRNA:   3'- gCGCC---------UGCCGCaGCaGaGCG-GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 1642 0.69 0.496656
Target:  5'- aGCGG-CGGCG-CGUCgggguacaggcgCGCgugCGCGGCc -3'
miRNA:   3'- gCGCCuGCCGCaGCAGa-----------GCG---GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 42956 0.69 0.498464
Target:  5'- -aCGGccagcGCGGCGUUGaagaUCUCGuuGCGGUu -3'
miRNA:   3'- gcGCC-----UGCCGCAGC----AGAGCggCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 130681 0.69 0.507549
Target:  5'- --aGGGCGGCGaUCGUgUucaacgagacCGCgGCGGCg -3'
miRNA:   3'- gcgCCUGCCGC-AGCAgA----------GCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 48334 0.69 0.507549
Target:  5'- aCGCGGcGCaGGaCGUCGaCgCGaCCGCGGCc -3'
miRNA:   3'- -GCGCC-UG-CC-GCAGCaGaGC-GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 41522 0.69 0.507549
Target:  5'- aCGaGGGCGGUaUCGUUgugCGCCcCGGCg -3'
miRNA:   3'- -GCgCCUGCCGcAGCAGa--GCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 147186 0.69 0.507549
Target:  5'- gGCGGAaGGCGUCccC-CGCC-CGGCg -3'
miRNA:   3'- gCGCCUgCCGCAGcaGaGCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2764 0.69 0.511202
Target:  5'- cCGCGGcgGCGGCGgcggCGgagCUCagcaggcgcgggcuCCGCGGCa -3'
miRNA:   3'- -GCGCC--UGCCGCa---GCa--GAGc-------------GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 35813 0.69 0.516703
Target:  5'- gGgGGGgGGCGUCGggaCUCGCgGagGGCc -3'
miRNA:   3'- gCgCCUgCCGCAGCa--GAGCGgCg-CCG- -5'
5521 3' -62.4 NC_001798.1 + 22391 0.69 0.525923
Target:  5'- gGCGGAacccCGGCGagcCGgggCGCgGCGGCg -3'
miRNA:   3'- gCGCCU----GCCGCa--GCagaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 68999 0.69 0.525923
Target:  5'- cCGCcucGGCGGCGUCGcgcgcaUCGUagGCGGCg -3'
miRNA:   3'- -GCGc--CUGCCGCAGCag----AGCGg-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.