miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 77248 0.74 0.270183
Target:  5'- gGCGGacGCGGUGUCGgccCUgGgCGCGGCc -3'
miRNA:   3'- gCGCC--UGCCGCAGCa--GAgCgGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 35279 0.74 0.276247
Target:  5'- aCGCGGGCGGgGcUCGggCUCuCCGgCGGCu -3'
miRNA:   3'- -GCGCCUGCCgC-AGCa-GAGcGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 98628 0.74 0.282419
Target:  5'- -uCGGGCGGCGUgGcCgcgacCGUCGCGGCg -3'
miRNA:   3'- gcGCCUGCCGCAgCaGa----GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 145803 0.74 0.282419
Target:  5'- gCGCGGGCGGCagaaacgCGgg-CGCgGCGGCg -3'
miRNA:   3'- -GCGCCUGCCGca-----GCagaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 27040 0.74 0.282419
Target:  5'- gGCGGGCGGCa-CGUCUC-CCGCGcccGCg -3'
miRNA:   3'- gCGCCUGCCGcaGCAGAGcGGCGC---CG- -5'
5521 3' -62.4 NC_001798.1 + 52728 0.73 0.2887
Target:  5'- gGCGGACGuGCG-CG-C-CGCCGCGGa -3'
miRNA:   3'- gCGCCUGC-CGCaGCaGaGCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 105394 0.73 0.29509
Target:  5'- --aGGGCGGCGUUcUCcagggcCGCCGCGGCc -3'
miRNA:   3'- gcgCCUGCCGCAGcAGa-----GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 36503 0.73 0.301589
Target:  5'- aCGCGGGCGGCcgggCGggggCgCGCgGCGGCc -3'
miRNA:   3'- -GCGCCUGCCGca--GCa---GaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 88080 0.73 0.301589
Target:  5'- gGCGG-CGGCGUCuagCUCGCggaggGCGGCc -3'
miRNA:   3'- gCGCCuGCCGCAGca-GAGCGg----CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 36103 0.73 0.306868
Target:  5'- gGUGGugGGgGggggcccggcugCGUCUCGCCGCGa- -3'
miRNA:   3'- gCGCCugCCgCa-----------GCAGAGCGGCGCcg -5'
5521 3' -62.4 NC_001798.1 + 153677 0.73 0.314918
Target:  5'- cCGCGGGCGGgGacgCGggggC-CGCCGcCGGCg -3'
miRNA:   3'- -GCGCCUGCCgCa--GCa---GaGCGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 58814 0.73 0.315596
Target:  5'- aGgGGAUGGaCGUCGUCggccagcaccagcagCGCCGCguaGGCg -3'
miRNA:   3'- gCgCCUGCC-GCAGCAGa--------------GCGGCG---CCG- -5'
5521 3' -62.4 NC_001798.1 + 121992 0.72 0.335737
Target:  5'- aCGCGGccucCGGCGUCGcCUCGgggcuCCGCcagGGCg -3'
miRNA:   3'- -GCGCCu---GCCGCAGCaGAGC-----GGCG---CCG- -5'
5521 3' -62.4 NC_001798.1 + 36426 0.72 0.335737
Target:  5'- gGCGGugGgGCGggGUCgggGUCGCGGCg -3'
miRNA:   3'- gCGCCugC-CGCagCAGag-CGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 104517 0.72 0.335737
Target:  5'- aCGCGG-CGGCGgcgCGguugacgUCGUCGCGGUg -3'
miRNA:   3'- -GCGCCuGCCGCa--GCag-----AGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 41175 0.72 0.335737
Target:  5'- uGCGGcCGGCGUaGUUcaaaagauaggUCGCCGgGGCc -3'
miRNA:   3'- gCGCCuGCCGCAgCAG-----------AGCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 134998 0.72 0.350165
Target:  5'- cCGCGGugGGCGccagggUCGUCcUGCCcccGCGGg -3'
miRNA:   3'- -GCGCCugCCGC------AGCAGaGCGG---CGCCg -5'
5521 3' -62.4 NC_001798.1 + 25874 0.72 0.355318
Target:  5'- cCGCGGACuGGCccgccgacgggcccGUgGUCUCGCgGCaGCa -3'
miRNA:   3'- -GCGCCUG-CCG--------------CAgCAGAGCGgCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 22337 0.71 0.380323
Target:  5'- aCGCGGACGcGCGggCGUCggGgCGgGGCc -3'
miRNA:   3'- -GCGCCUGC-CGCa-GCAGagCgGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 97756 0.71 0.387344
Target:  5'- uGCGGgucagcguccACGGCGagGUgcugcccgcgaccUUCGCCGCGGUg -3'
miRNA:   3'- gCGCC----------UGCCGCagCA-------------GAGCGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.