miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 23002 1.11 0.000712
Target:  5'- cCGCGGACGGCGUCGUCUCGCCGCGGCa -3'
miRNA:   3'- -GCGCCUGCCGCAGCAGAGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 4228 0.83 0.065131
Target:  5'- gCGCGGGCGGCGUCGUCgUCGUCGUcGUc -3'
miRNA:   3'- -GCGCCUGCCGCAGCAG-AGCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 3334 0.8 0.107396
Target:  5'- gGCGGGCuucccgcgGGCGUCGUCgcCGUCGUGGCg -3'
miRNA:   3'- gCGCCUG--------CCGCAGCAGa-GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 153973 0.8 0.110078
Target:  5'- aCGCGGcCGGCG-CGcUCUCGaCCGCGGUu -3'
miRNA:   3'- -GCGCCuGCCGCaGC-AGAGC-GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 150650 0.78 0.140556
Target:  5'- uCGCGGGgGGCGUCcugcccUCcgcCGCCGCGGCg -3'
miRNA:   3'- -GCGCCUgCCGCAGc-----AGa--GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 43148 0.78 0.158545
Target:  5'- aCGCGGGCccaGUCGUCccgcgcCGCCGCGGCa -3'
miRNA:   3'- -GCGCCUGccgCAGCAGa-----GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 4462 0.77 0.174407
Target:  5'- cCGCGGaccGCGGaCGUCGUCUCcgguCCGCGGa -3'
miRNA:   3'- -GCGCC---UGCC-GCAGCAGAGc---GGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 21655 0.77 0.182858
Target:  5'- uCGCcGcCGGCGUCucuGUCUCGCUGUGGCc -3'
miRNA:   3'- -GCGcCuGCCGCAG---CAGAGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2684 0.76 0.196212
Target:  5'- gGCGGgcGCGGCGagCGagUCgGCCGCGGCg -3'
miRNA:   3'- gCGCC--UGCCGCa-GCagAG-CGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 148408 0.76 0.200849
Target:  5'- uGCGGGCGGgGUgGg--CGCCGgGGCg -3'
miRNA:   3'- gCGCCUGCCgCAgCagaGCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 22769 0.76 0.200849
Target:  5'- aCGaGGACGGgGgaCGUCUCcggGCCGCGGCg -3'
miRNA:   3'- -GCgCCUGCCgCa-GCAGAG---CGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2483 0.75 0.215336
Target:  5'- gGCGGGcCGGCGg-GUCagCGCCGCGGg -3'
miRNA:   3'- gCGCCU-GCCGCagCAGa-GCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 7886 0.75 0.225484
Target:  5'- gGCGGACGGC--CGcCaugaauuuuaUCGCCGCGGCu -3'
miRNA:   3'- gCGCCUGCCGcaGCaG----------AGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 35435 0.75 0.230709
Target:  5'- gGCGGGaGGCGUgGgccgCUggCGCCGCGGCc -3'
miRNA:   3'- gCGCCUgCCGCAgCa---GA--GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 79966 0.75 0.236035
Target:  5'- aGCGG-CGGCGccgCGUC-CGCCGCcgGGCc -3'
miRNA:   3'- gCGCCuGCCGCa--GCAGaGCGGCG--CCG- -5'
5521 3' -62.4 NC_001798.1 + 26525 0.75 0.245326
Target:  5'- gGCGGGCGGCGgCGUggaggugguggggaC-CGCCGCGGg -3'
miRNA:   3'- gCGCCUGCCGCaGCA--------------GaGCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 53812 0.75 0.246997
Target:  5'- uGUGGACGGCGgacaaguacgUGUgUCGCCGCcugGGCc -3'
miRNA:   3'- gCGCCUGCCGCa---------GCAgAGCGGCG---CCG- -5'
5521 3' -62.4 NC_001798.1 + 70244 0.74 0.252635
Target:  5'- gCGCGGACGaGCcggCGUUUCuGuCCGCGGCc -3'
miRNA:   3'- -GCGCCUGC-CGca-GCAGAG-C-GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 16434 0.74 0.252635
Target:  5'- uGgGGACGGCGg---CUCGCCGCcGCg -3'
miRNA:   3'- gCgCCUGCCGCagcaGAGCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 4906 0.74 0.252635
Target:  5'- cCG-GGGCcGCcgGUCGUCUcCGCCGCGGCc -3'
miRNA:   3'- -GCgCCUGcCG--CAGCAGA-GCGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.