Results 1 - 20 of 182 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 64822 | 0.66 | 0.706712 |
Target: 5'- cCGCGGGCuGGCGuUCGaaaagCGCUcccagugaaaGCGGCc -3' miRNA: 3'- -GCGCCUG-CCGC-AGCaga--GCGG----------CGCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 65394 | 0.66 | 0.686849 |
Target: 5'- -cUGGAUGGgGaUCGUUUCGCCGaaccccaUGGCc -3' miRNA: 3'- gcGCCUGCCgC-AGCAGAGCGGC-------GCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 154154 | 0.66 | 0.6878 |
Target: 5'- gGCGGGCGGC-UgGgCUCGgCGUaGGCc -3' miRNA: 3'- gCGCCUGCCGcAgCaGAGCgGCG-CCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 4104 | 0.66 | 0.6878 |
Target: 5'- gGCGGGCucggcccugGGCGgg--CUCgGCCGgGGCg -3' miRNA: 3'- gCGCCUG---------CCGCagcaGAG-CGGCgCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 4364 | 0.66 | 0.6878 |
Target: 5'- gGCGGGgGGCG-CGcCg-GCgGCGGUg -3' miRNA: 3'- gCGCCUgCCGCaGCaGagCGgCGCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 36305 | 0.66 | 0.6878 |
Target: 5'- gGUGuGGCGGCGgggCG-CggGCCGgGGCc -3' miRNA: 3'- gCGC-CUGCCGCa--GCaGagCGGCgCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 131158 | 0.66 | 0.6878 |
Target: 5'- gGgGGACGGCuacacccccgCGcacCUCGaCCGUGGCg -3' miRNA: 3'- gCgCCUGCCGca--------GCa--GAGC-GGCGCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 134470 | 0.66 | 0.6878 |
Target: 5'- gCGCGGuuGGCGUgGgcgCGCC-UGGCc -3' miRNA: 3'- -GCGCCugCCGCAgCagaGCGGcGCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 57042 | 0.66 | 0.6878 |
Target: 5'- aCGCGGACgGGCG--GUC-CGUC-CGGCc -3' miRNA: 3'- -GCGCCUG-CCGCagCAGaGCGGcGCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 121253 | 0.66 | 0.694441 |
Target: 5'- gGCGG-CGGCGgggGUCcCGCuguccgcccucgugCGCGGCc -3' miRNA: 3'- gCGCCuGCCGCag-CAGaGCG--------------GCGCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 95305 | 0.66 | 0.69728 |
Target: 5'- uGUGcGCGGCGUCGagUCUCGggggCGgGGCc -3' miRNA: 3'- gCGCcUGCCGCAGC--AGAGCg---GCgCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 134678 | 0.66 | 0.69728 |
Target: 5'- aGCGGgucACGGCG-CGggugCUgcUGCCGCgcGGCu -3' miRNA: 3'- gCGCC---UGCCGCaGCa---GA--GCGGCG--CCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 4400 | 0.66 | 0.69728 |
Target: 5'- gGUGGuguCGGCGgggCGcCggggGUCGCGGCg -3' miRNA: 3'- gCGCCu--GCCGCa--GCaGag--CGGCGCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 43263 | 0.66 | 0.69728 |
Target: 5'- uCGCcGGgGGCGUCGUgcccugcugCUcCGUgGCGGCc -3' miRNA: 3'- -GCGcCUgCCGCAGCA---------GA-GCGgCGCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 129062 | 0.66 | 0.69728 |
Target: 5'- gGUGGaguuaaauaGCGGCGUUGUCUCGgaggugcuuCUGUuuGGCg -3' miRNA: 3'- gCGCC---------UGCCGCAGCAGAGC---------GGCG--CCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 53967 | 0.66 | 0.698226 |
Target: 5'- uGCGGGCGGCGgucagcgaCGUCcugggccaccugacgCGCC-UGGCc -3' miRNA: 3'- gCGCCUGCCGCa-------GCAGa--------------GCGGcGCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 31150 | 0.66 | 0.706712 |
Target: 5'- gCGgGGGCGGCGgugCGggggCGacCCGCGGa -3' miRNA: 3'- -GCgCCUGCCGCa--GCaga-GC--GGCGCCg -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 111135 | 0.66 | 0.706712 |
Target: 5'- aGCaGGGCGGCGcUGUCggcccgcgCGUCGCuccccaccGGCa -3' miRNA: 3'- gCG-CCUGCCGCaGCAGa-------GCGGCG--------CCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 39630 | 0.66 | 0.706712 |
Target: 5'- gGCGGGguuuUGGUGUggaGUCggcgcCGCCGgGGCc -3' miRNA: 3'- gCGCCU----GCCGCAg--CAGa----GCGGCgCCG- -5' |
|||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 115552 | 0.66 | 0.706712 |
Target: 5'- gCGCGGACaugcagcaGCGUUuUCUgaaCGCCugGCGGCa -3' miRNA: 3'- -GCGCCUGc-------CGCAGcAGA---GCGG--CGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home