miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 69 0.69 0.480518
Target:  5'- gGCGGGCGGCGgCGgCggGCgGgCGGCa -3'
miRNA:   3'- gCGCCUGCCGCaGCaGagCGgC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 1138 0.67 0.601492
Target:  5'- uCGCGccucGGCGGCGUgGcCagCcCCGCGGCg -3'
miRNA:   3'- -GCGC----CUGCCGCAgCaGa-GcGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 1255 0.66 0.649542
Target:  5'- gGCGGGCccgcguccGCGUCGUCgCGCagcaccaGCGGg -3'
miRNA:   3'- gCGCCUGc-------CGCAGCAGaGCGg------CGCCg -5'
5521 3' -62.4 NC_001798.1 + 1480 0.69 0.489452
Target:  5'- gCGcCGGGCgccauGGCGUCGcCcgCGCCcgagGCGGCg -3'
miRNA:   3'- -GC-GCCUG-----CCGCAGCaGa-GCGG----CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 1642 0.69 0.496656
Target:  5'- aGCGG-CGGCG-CGUCgggguacaggcgCGCgugCGCGGCc -3'
miRNA:   3'- gCGCCuGCCGCaGCAGa-----------GCG---GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2115 0.68 0.553933
Target:  5'- gCGCGGcccGCGGCcagGUcCUCGCC-CGGCa -3'
miRNA:   3'- -GCGCC---UGCCGcagCA-GAGCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2238 0.66 0.678278
Target:  5'- aGCGGGCcgaaGGCGgCGggcgCGCCGCcggggGGCg -3'
miRNA:   3'- gCGCCUG----CCGCaGCaga-GCGGCG-----CCG- -5'
5521 3' -62.4 NC_001798.1 + 2483 0.75 0.215336
Target:  5'- gGCGGGcCGGCGg-GUCagCGCCGCGGg -3'
miRNA:   3'- gCGCCU-GCCGCagCAGa-GCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 2519 0.71 0.412169
Target:  5'- cCGCGGcgGCGGCGUCGgcggggCggggGgCGCGGCc -3'
miRNA:   3'- -GCGCC--UGCCGCAGCa-----Gag--CgGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2572 0.7 0.445612
Target:  5'- cCGCgGGGCGGgGggCGUC-CGC-GCGGCu -3'
miRNA:   3'- -GCG-CCUGCCgCa-GCAGaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2612 0.68 0.535205
Target:  5'- gCGCGGGgcgccgccCGGCGgCGccCUgGCCGgGGCg -3'
miRNA:   3'- -GCGCCU--------GCCGCaGCa-GAgCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 2684 0.76 0.196212
Target:  5'- gGCGGgcGCGGCGagCGagUCgGCCGCGGCg -3'
miRNA:   3'- gCGCC--UGCCGCa-GCagAG-CGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2764 0.69 0.511202
Target:  5'- cCGCGGcgGCGGCGgcggCGgagCUCagcaggcgcgggcuCCGCGGCa -3'
miRNA:   3'- -GCGCC--UGCCGCa---GCa--GAGc-------------GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2855 0.67 0.63993
Target:  5'- gGCGGccACGGCGgccUCG-CU-GCCGcCGGCc -3'
miRNA:   3'- gCGCC--UGCCGC---AGCaGAgCGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 3164 0.66 0.667766
Target:  5'- cCGCcGGCGcCGUCGUCgucgucgUCGUCGuCGGCc -3'
miRNA:   3'- -GCGcCUGCcGCAGCAG-------AGCGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 3271 0.67 0.612047
Target:  5'- gGCGGGCaccgcGCGcUCGUCggccggcgacgccgcCGCCGaCGGCa -3'
miRNA:   3'- gCGCCUGc----CGC-AGCAGa--------------GCGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 3334 0.8 0.107396
Target:  5'- gGCGGGCuucccgcgGGCGUCGUCgcCGUCGUGGCg -3'
miRNA:   3'- gCGCCUG--------CCGCAGCAGa-GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 3972 0.67 0.601492
Target:  5'- cCGCGu-CGGCGUCcagCUCGaCCGCcggGGCc -3'
miRNA:   3'- -GCGCcuGCCGCAGca-GAGC-GGCG---CCG- -5'
5521 3' -62.4 NC_001798.1 + 4048 0.7 0.443051
Target:  5'- gCGCGGGCccGGCGgCGcUCcaggcggcccgcggUCGCCGCGGg -3'
miRNA:   3'- -GCGCCUG--CCGCaGC-AG--------------AGCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 4104 0.66 0.6878
Target:  5'- gGCGGGCucggcccugGGCGgg--CUCgGCCGgGGCg -3'
miRNA:   3'- gCGCCUG---------CCGCagcaGAG-CGGCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.