miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 154407 0.69 0.480518
Target:  5'- gGCGGGCGGCGgCGgCggGCgGgCGGCa -3'
miRNA:   3'- gCGCCUGCCGCaGCaGagCGgC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 154154 0.66 0.6878
Target:  5'- gGCGGGCGGC-UgGgCUCGgCGUaGGCc -3'
miRNA:   3'- gCGCCUGCCGcAgCaGAGCgGCG-CCG- -5'
5521 3' -62.4 NC_001798.1 + 154079 0.67 0.611087
Target:  5'- nCGCGGcACGGC--UGgagCGCCGgGGCg -3'
miRNA:   3'- -GCGCC-UGCCGcaGCagaGCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 154055 0.67 0.591918
Target:  5'- gCGCGGcACGGC--UGgagCGCCGgGGCg -3'
miRNA:   3'- -GCGCC-UGCCGcaGCagaGCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 153973 0.8 0.110078
Target:  5'- aCGCGGcCGGCG-CGcUCUCGaCCGCGGUu -3'
miRNA:   3'- -GCGCCuGCCGCaGC-AGAGC-GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 153797 0.7 0.462892
Target:  5'- gCGCGG-CGGCGgCGgggggCagGCgGCGGCa -3'
miRNA:   3'- -GCGCCuGCCGCaGCa----GagCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 153677 0.73 0.314918
Target:  5'- cCGCGGGCGGgGacgCGggggC-CGCCGcCGGCg -3'
miRNA:   3'- -GCGCCUGCCgCa--GCa---GaGCGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 153079 0.7 0.462892
Target:  5'- gGCGGAgCGGCGgggCGg--CGCCG-GGCc -3'
miRNA:   3'- gCGCCU-GCCGCa--GCagaGCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 153036 0.66 0.648582
Target:  5'- cCGCGcGGCGGCGcgCGguuggCcggCGCCGCccccuggGGCg -3'
miRNA:   3'- -GCGC-CUGCCGCa-GCa----Ga--GCGGCG-------CCG- -5'
5521 3' -62.4 NC_001798.1 + 150833 0.66 0.668724
Target:  5'- cCGCGGggcgccagGgGGCGcCgGUCggGUCGCGGCg -3'
miRNA:   3'- -GCGCC--------UgCCGCaG-CAGagCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 150650 0.78 0.140556
Target:  5'- uCGCGGGgGGCGUCcugcccUCcgcCGCCGCGGCg -3'
miRNA:   3'- -GCGCCUgCCGCAGc-----AGa--GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 150375 0.69 0.525923
Target:  5'- gGCGGGCGGCG-CGggcccgGCCGCGuccGCg -3'
miRNA:   3'- gCGCCUGCCGCaGCagag--CGGCGC---CG- -5'
5521 3' -62.4 NC_001798.1 + 150196 0.66 0.659142
Target:  5'- gCGUGGGgGGCGgcaccgggggUGUUggUGCCGCGGg -3'
miRNA:   3'- -GCGCCUgCCGCa---------GCAGa-GCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 149993 0.66 0.649542
Target:  5'- cCGCGGACgccggGGCGagCGgcccgUgGCCGCGGUc -3'
miRNA:   3'- -GCGCCUG-----CCGCa-GCag---AgCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 149397 0.7 0.462892
Target:  5'- aCGCGGGgGGCGUCGgguaGUCGgGGg -3'
miRNA:   3'- -GCGCCUgCCGCAGCagagCGGCgCCg -5'
5521 3' -62.4 NC_001798.1 + 149244 0.7 0.445612
Target:  5'- cCGCGGG-GGCGUCGcCggcCGgCGCGGg -3'
miRNA:   3'- -GCGCCUgCCGCAGCaGa--GCgGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 148408 0.76 0.200849
Target:  5'- uGCGGGCGGgGUgGg--CGCCGgGGCg -3'
miRNA:   3'- gCGCCUGCCgCAgCagaGCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 147186 0.69 0.507549
Target:  5'- gGCGGAaGGCGUCccC-CGCC-CGGCg -3'
miRNA:   3'- gCGCCUgCCGCAGcaGaGCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 145803 0.74 0.282419
Target:  5'- gCGCGGGCGGCagaaacgCGgg-CGCgGCGGCg -3'
miRNA:   3'- -GCGCCUGCCGca-----GCagaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 144325 0.68 0.572851
Target:  5'- gGCagGGGCGGCGUCGcaUCGCCcgacagccccaGgGGCu -3'
miRNA:   3'- gCG--CCUGCCGCAGCagAGCGG-----------CgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.