miRNA display CGI


Results 21 - 40 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 134998 0.72 0.350165
Target:  5'- cCGCGGugGGCGccagggUCGUCcUGCCcccGCGGg -3'
miRNA:   3'- -GCGCCugCCGC------AGCAGaGCGG---CGCCg -5'
5521 3' -62.4 NC_001798.1 + 134940 0.7 0.454207
Target:  5'- gCGCGuGACcuGGUG-CGgggCGCCGCGGCc -3'
miRNA:   3'- -GCGC-CUG--CCGCaGCagaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 134678 0.66 0.69728
Target:  5'- aGCGGgucACGGCG-CGggugCUgcUGCCGCgcGGCu -3'
miRNA:   3'- gCGCC---UGCCGCaGCa---GA--GCGGCG--CCG- -5'
5521 3' -62.4 NC_001798.1 + 134470 0.66 0.6878
Target:  5'- gCGCGGuuGGCGUgGgcgCGCC-UGGCc -3'
miRNA:   3'- -GCGCCugCCGCAgCagaGCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 131158 0.66 0.6878
Target:  5'- gGgGGACGGCuacacccccgCGcacCUCGaCCGUGGCg -3'
miRNA:   3'- gCgCCUGCCGca--------GCa--GAGC-GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 130681 0.69 0.507549
Target:  5'- --aGGGCGGCGaUCGUgUucaacgagacCGCgGCGGCg -3'
miRNA:   3'- gcgCCUGCCGC-AGCAgA----------GCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 129062 0.66 0.69728
Target:  5'- gGUGGaguuaaauaGCGGCGUUGUCUCGgaggugcuuCUGUuuGGCg -3'
miRNA:   3'- gCGCC---------UGCCGCAGCAGAGC---------GGCG--CCG- -5'
5521 3' -62.4 NC_001798.1 + 126366 0.7 0.437108
Target:  5'- gCGCGGGacugucccgaUGGCGagugagccgcUCGUCUCGUCGCcGCu -3'
miRNA:   3'- -GCGCCU----------GCCGC----------AGCAGAGCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 124341 0.66 0.677324
Target:  5'- gCGCGGAaaGCGUCaUC-CGCCcgaccagcgccggGUGGCg -3'
miRNA:   3'- -GCGCCUgcCGCAGcAGaGCGG-------------CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 121992 0.72 0.335737
Target:  5'- aCGCGGccucCGGCGUCGcCUCGgggcuCCGCcagGGCg -3'
miRNA:   3'- -GCGCCu---GCCGCAGCaGAGC-----GGCG---CCG- -5'
5521 3' -62.4 NC_001798.1 + 121471 0.71 0.403247
Target:  5'- gCGCGGGCGGgcUGuUCGUCUCccugccgGUCGCGuGCg -3'
miRNA:   3'- -GCGCCUGCC--GC-AGCAGAG-------CGGCGC-CG- -5'
5521 3' -62.4 NC_001798.1 + 121253 0.66 0.694441
Target:  5'- gGCGG-CGGCGgggGUCcCGCuguccgcccucgugCGCGGCc -3'
miRNA:   3'- gCGCCuGCCGCag-CAGaGCG--------------GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 116328 0.7 0.471663
Target:  5'- aCGCGGGgGGgcaCGagccCGUCUaCGCgGCGGCg -3'
miRNA:   3'- -GCGCCUgCC---GCa---GCAGA-GCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 115552 0.66 0.706712
Target:  5'- gCGCGGACaugcagcaGCGUUuUCUgaaCGCCugGCGGCa -3'
miRNA:   3'- -GCGCCUGc-------CGCAGcAGA---GCGG--CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 113635 0.67 0.619735
Target:  5'- gCGCGGcCGGCGcCGcCaugugggUgGCgGCGGCg -3'
miRNA:   3'- -GCGCCuGCCGCaGCaG-------AgCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 111135 0.66 0.706712
Target:  5'- aGCaGGGCGGCGcUGUCggcccgcgCGUCGCuccccaccGGCa -3'
miRNA:   3'- gCG-CCUGCCGCaGCAGa-------GCGGCG--------CCG- -5'
5521 3' -62.4 NC_001798.1 + 108859 0.67 0.630313
Target:  5'- gGCGGGCuGGCGuUCGggugCgaCGCCGCGcucguGCg -3'
miRNA:   3'- gCGCCUG-CCGC-AGCa---Ga-GCGGCGC-----CG- -5'
5521 3' -62.4 NC_001798.1 + 107406 0.68 0.544543
Target:  5'- gGCGGGaggacuggggcCGGCuGaCGggggUCGCCGCGGCg -3'
miRNA:   3'- gCGCCU-----------GCCG-CaGCag--AGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 105394 0.73 0.29509
Target:  5'- --aGGGCGGCGUUcUCcagggcCGCCGCGGCc -3'
miRNA:   3'- gcgCCUGCCGCAGcAGa-----GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 105203 0.68 0.553933
Target:  5'- cCGCGGugGGCGaCGgcgCUgcccCGuCCGCaGCg -3'
miRNA:   3'- -GCGCCugCCGCaGCa--GA----GC-GGCGcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.