miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 4195 0.69 0.480518
Target:  5'- cCGCccGCGGCGUgGUCUgCGgCGCuGGCg -3'
miRNA:   3'- -GCGccUGCCGCAgCAGA-GCgGCG-CCG- -5'
5521 3' -62.4 NC_001798.1 + 4228 0.83 0.065131
Target:  5'- gCGCGGGCGGCGUCGUCgUCGUCGUcGUc -3'
miRNA:   3'- -GCGCCUGCCGCAGCAG-AGCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 4364 0.66 0.6878
Target:  5'- gGCGGGgGGCG-CGcCg-GCgGCGGUg -3'
miRNA:   3'- gCGCCUgCCGCaGCaGagCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 4400 0.66 0.69728
Target:  5'- gGUGGuguCGGCGgggCGcCggggGUCGCGGCg -3'
miRNA:   3'- gCGCCu--GCCGCa--GCaGag--CGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 4462 0.77 0.174407
Target:  5'- cCGCGGaccGCGGaCGUCGUCUCcgguCCGCGGa -3'
miRNA:   3'- -GCGCC---UGCC-GCAGCAGAGc---GGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 4499 0.66 0.668724
Target:  5'- aGCGGcccgcgucGCGGuCGUCGUCaUCGUCGUcGUc -3'
miRNA:   3'- gCGCC--------UGCC-GCAGCAG-AGCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 4779 0.68 0.552051
Target:  5'- gGCGG-CGGCGUCGUCggccUCGUCuucguucuccucCGGCc -3'
miRNA:   3'- gCGCCuGCCGCAGCAG----AGCGGc-----------GCCG- -5'
5521 3' -62.4 NC_001798.1 + 4906 0.74 0.252635
Target:  5'- cCG-GGGCcGCcgGUCGUCUcCGCCGCGGCc -3'
miRNA:   3'- -GCgCCUGcCG--CAGCAGA-GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 5389 0.68 0.572851
Target:  5'- cCGUGG-CGGCGgccCGUUggucgCGCCGCcGCc -3'
miRNA:   3'- -GCGCCuGCCGCa--GCAGa----GCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 7886 0.75 0.225484
Target:  5'- gGCGGACGGC--CGcCaugaauuuuaUCGCCGCGGCu -3'
miRNA:   3'- gCGCCUGCCGcaGCaG----------AGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 9148 0.7 0.428698
Target:  5'- aCGCGGgcGCGGCGcCGcCcgCGCCGgGGg -3'
miRNA:   3'- -GCGCC--UGCCGCaGCaGa-GCGGCgCCg -5'
5521 3' -62.4 NC_001798.1 + 11602 0.67 0.601492
Target:  5'- gCGUGGAauugGGCGgggcuaUCUCGCCGCucgcgGGCg -3'
miRNA:   3'- -GCGCCUg---CCGCagc---AGAGCGGCG-----CCG- -5'
5521 3' -62.4 NC_001798.1 + 15508 0.7 0.454207
Target:  5'- gGUGGGgGGCGU--UUUCGCUGCGGa -3'
miRNA:   3'- gCGCCUgCCGCAgcAGAGCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 15554 0.66 0.649542
Target:  5'- -cCGGccccgGGCGUUGcCgcCGCCGCGGCg -3'
miRNA:   3'- gcGCCug---CCGCAGCaGa-GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 16070 0.69 0.480518
Target:  5'- uGgGGGCGGCGggCGUCU-GUgGgGGCa -3'
miRNA:   3'- gCgCCUGCCGCa-GCAGAgCGgCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 16434 0.74 0.252635
Target:  5'- uGgGGACGGCGg---CUCGCCGCcGCg -3'
miRNA:   3'- gCgCCUGCCGCagcaGAGCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 21655 0.77 0.182858
Target:  5'- uCGCcGcCGGCGUCucuGUCUCGCUGUGGCc -3'
miRNA:   3'- -GCGcCuGCCGCAG---CAGAGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 22337 0.71 0.380323
Target:  5'- aCGCGGACGcGCGggCGUCggGgCGgGGCc -3'
miRNA:   3'- -GCGCCUGC-CGCa-GCAGagCgGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 22391 0.69 0.525923
Target:  5'- gGCGGAacccCGGCGagcCGgggCGCgGCGGCg -3'
miRNA:   3'- gCGCCU----GCCGCa--GCagaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 22769 0.76 0.200849
Target:  5'- aCGaGGACGGgGgaCGUCUCcggGCCGCGGCg -3'
miRNA:   3'- -GCgCCUGCCgCa-GCAGAG---CGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.