miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 104727 0.68 0.572851
Target:  5'- aGCGGuacuGCgGGCGUCcgcUCUCGucgccgauuaCCGCGGCc -3'
miRNA:   3'- gCGCC----UG-CCGCAGc--AGAGC----------GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 104517 0.72 0.335737
Target:  5'- aCGCGG-CGGCGgcgCGguugacgUCGUCGCGGUg -3'
miRNA:   3'- -GCGCCuGCCGCa--GCag-----AGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 102747 0.68 0.563371
Target:  5'- -aCGGACGGCGaccugCGgcgCgggaaCGCuCGCGGCg -3'
miRNA:   3'- gcGCCUGCCGCa----GCa--Ga----GCG-GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 98628 0.74 0.282419
Target:  5'- -uCGGGCGGCGUgGcCgcgacCGUCGCGGCg -3'
miRNA:   3'- gcGCCUGCCGCAgCaGa----GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 98581 0.7 0.454207
Target:  5'- cCGCGG-UGGCGUCGgCg-GCCcCGGCg -3'
miRNA:   3'- -GCGCCuGCCGCAGCaGagCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 98494 0.66 0.649542
Target:  5'- aGCGGGCGGCGggagCGaCgCGCCcccguaGGCc -3'
miRNA:   3'- gCGCCUGCCGCa---GCaGaGCGGcg----CCG- -5'
5521 3' -62.4 NC_001798.1 + 97756 0.71 0.387344
Target:  5'- uGCGGgucagcguccACGGCGagGUgcugcccgcgaccUUCGCCGCGGUg -3'
miRNA:   3'- gCGCC----------UGCCGCagCA-------------GAGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 97645 0.71 0.396039
Target:  5'- cCGCGGACGuGCGggag--CGCCGgCGGCu -3'
miRNA:   3'- -GCGCCUGC-CGCagcagaGCGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 95699 0.67 0.601492
Target:  5'- gGCGGcCGGCGUCGcC-CGaaaGCGGg -3'
miRNA:   3'- gCGCCuGCCGCAGCaGaGCgg-CGCCg -5'
5521 3' -62.4 NC_001798.1 + 95662 0.66 0.659142
Target:  5'- aCGCGGcgucguuCGGCG--GUUUgGCgGCGGCg -3'
miRNA:   3'- -GCGCCu------GCCGCagCAGAgCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 95534 0.66 0.649542
Target:  5'- gCGCGGGCauGGCGagUgGUCgacCGaCGCGGCc -3'
miRNA:   3'- -GCGCCUG--CCGC--AgCAGa--GCgGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 95375 0.67 0.591918
Target:  5'- uGCGGAgGGCGgggCGgcggUCGCCaGCaGCg -3'
miRNA:   3'- gCGCCUgCCGCa--GCag--AGCGG-CGcCG- -5'
5521 3' -62.4 NC_001798.1 + 95305 0.66 0.69728
Target:  5'- uGUGcGCGGCGUCGagUCUCGggggCGgGGCc -3'
miRNA:   3'- gCGCcUGCCGCAGC--AGAGCg---GCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 95007 0.66 0.659142
Target:  5'- cCGCaGGGCGGCG-CGggcCUggagGCCGgGGCc -3'
miRNA:   3'- -GCG-CCUGCCGCaGCa--GAg---CGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 92928 0.67 0.630313
Target:  5'- -uCGaGGCGGuCGUCGggcccgC-CGCCGUGGCc -3'
miRNA:   3'- gcGC-CUGCC-GCAGCa-----GaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 92335 0.67 0.630313
Target:  5'- aCGCGGACGuCGcCGUCgCGCCccucaucguCGGCc -3'
miRNA:   3'- -GCGCCUGCcGCaGCAGaGCGGc--------GCCG- -5'
5521 3' -62.4 NC_001798.1 + 90859 0.68 0.582369
Target:  5'- gGCGuGAUGGCGUCcauaaaUCGCUcguggagcuggGCGGCg -3'
miRNA:   3'- gCGC-CUGCCGCAGcag---AGCGG-----------CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 90400 0.67 0.591918
Target:  5'- gCGCGGuugggcCGGCG-CG-UUC-CCGCGGCc -3'
miRNA:   3'- -GCGCCu-----GCCGCaGCaGAGcGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 89582 0.66 0.649542
Target:  5'- gCGCGcGACGGCGgaaagCUCcaGgUGCGGCa -3'
miRNA:   3'- -GCGC-CUGCCGCagca-GAG--CgGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 88080 0.73 0.301589
Target:  5'- gGCGG-CGGCGUCuagCUCGCggaggGCGGCc -3'
miRNA:   3'- gCGCCuGCCGCAGca-GAGCGg----CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.