miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 53967 0.66 0.698226
Target:  5'- uGCGGGCGGCGgucagcgaCGUCcugggccaccugacgCGCC-UGGCc -3'
miRNA:   3'- gCGCCUGCCGCa-------GCAGa--------------GCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 31150 0.66 0.706712
Target:  5'- gCGgGGGCGGCGgugCGggggCGacCCGCGGa -3'
miRNA:   3'- -GCgCCUGCCGCa--GCaga-GC--GGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 111135 0.66 0.706712
Target:  5'- aGCaGGGCGGCGcUGUCggcccgcgCGUCGCuccccaccGGCa -3'
miRNA:   3'- gCG-CCUGCCGCaGCAGa-------GCGGCG--------CCG- -5'
5521 3' -62.4 NC_001798.1 + 39630 0.66 0.706712
Target:  5'- gGCGGGguuuUGGUGUggaGUCggcgcCGCCGgGGCc -3'
miRNA:   3'- gCGCCU----GCCGCAg--CAGa----GCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 64822 0.66 0.706712
Target:  5'- cCGCGGGCuGGCGuUCGaaaagCGCUcccagugaaaGCGGCc -3'
miRNA:   3'- -GCGCCUG-CCGC-AGCaga--GCGG----------CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 131158 0.66 0.6878
Target:  5'- gGgGGACGGCuacacccccgCGcacCUCGaCCGUGGCg -3'
miRNA:   3'- gCgCCUGCCGca--------GCa--GAGC-GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 36305 0.66 0.6878
Target:  5'- gGUGuGGCGGCGgggCG-CggGCCGgGGCc -3'
miRNA:   3'- gCGC-CUGCCGCa--GCaGagCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 45293 0.66 0.668724
Target:  5'- gGCGGACGuGC-UCGUCUC-CCa-GGCc -3'
miRNA:   3'- gCGCCUGC-CGcAGCAGAGcGGcgCCG- -5'
5521 3' -62.4 NC_001798.1 + 60315 0.66 0.668724
Target:  5'- aCGUGGugGGUuuggCgGUCUCGuccCCGaCGGCg -3'
miRNA:   3'- -GCGCCugCCGca--G-CAGAGC---GGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 60825 0.66 0.668724
Target:  5'- gGCaGGGCGGCcaGUcuucCGUC-CGCucgCGCGGCg -3'
miRNA:   3'- gCG-CCUGCCG--CA----GCAGaGCG---GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 150833 0.66 0.668724
Target:  5'- cCGCGGggcgccagGgGGCGcCgGUCggGUCGCGGCg -3'
miRNA:   3'- -GCGCC--------UgCCGCaG-CAGagCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 124341 0.66 0.677324
Target:  5'- gCGCGGAaaGCGUCaUC-CGCCcgaccagcgccggGUGGCg -3'
miRNA:   3'- -GCGCCUgcCGCAGcAGaGCGG-------------CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2238 0.66 0.678278
Target:  5'- aGCGGGCcgaaGGCGgCGggcgCGCCGCcggggGGCg -3'
miRNA:   3'- gCGCCUG----CCGCaGCaga-GCGGCG-----CCG- -5'
5521 3' -62.4 NC_001798.1 + 39467 0.66 0.678278
Target:  5'- aGCGGAgggggggccUGGCG-CGUgcCUCgugGCCGCGGg -3'
miRNA:   3'- gCGCCU---------GCCGCaGCA--GAG---CGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 63179 0.66 0.678278
Target:  5'- aCGaCGGcccCGGCGUaCGaggUGCUGCGGCa -3'
miRNA:   3'- -GC-GCCu--GCCGCA-GCagaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 31543 0.66 0.685898
Target:  5'- cCGgGGGgGGaggucugccacaGUCGUCggggcgCGCCGCGcGCc -3'
miRNA:   3'- -GCgCCUgCCg-----------CAGCAGa-----GCGGCGC-CG- -5'
5521 3' -62.4 NC_001798.1 + 65394 0.66 0.686849
Target:  5'- -cUGGAUGGgGaUCGUUUCGCCGaaccccaUGGCc -3'
miRNA:   3'- gcGCCUGCCgC-AGCAGAGCGGC-------GCCG- -5'
5521 3' -62.4 NC_001798.1 + 154154 0.66 0.6878
Target:  5'- gGCGGGCGGC-UgGgCUCGgCGUaGGCc -3'
miRNA:   3'- gCGCCUGCCGcAgCaGAGCgGCG-CCG- -5'
5521 3' -62.4 NC_001798.1 + 4104 0.66 0.6878
Target:  5'- gGCGGGCucggcccugGGCGgg--CUCgGCCGgGGCg -3'
miRNA:   3'- gCGCCUG---------CCGCagcaGAG-CGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 4364 0.66 0.6878
Target:  5'- gGCGGGgGGCG-CGcCg-GCgGCGGUg -3'
miRNA:   3'- gCGCCUgCCGCaGCaGagCGgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.