miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 57042 0.66 0.6878
Target:  5'- aCGCGGACgGGCG--GUC-CGUC-CGGCc -3'
miRNA:   3'- -GCGCCUG-CCGCagCAGaGCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 134470 0.66 0.6878
Target:  5'- gCGCGGuuGGCGUgGgcgCGCC-UGGCc -3'
miRNA:   3'- -GCGCCugCCGCAgCagaGCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 150833 0.66 0.668724
Target:  5'- cCGCGGggcgccagGgGGCGcCgGUCggGUCGCGGCg -3'
miRNA:   3'- -GCGCC--------UgCCGCaG-CAGagCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 124341 0.66 0.677324
Target:  5'- gCGCGGAaaGCGUCaUC-CGCCcgaccagcgccggGUGGCg -3'
miRNA:   3'- -GCGCCUgcCGCAGcAGaGCGG-------------CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 2238 0.66 0.678278
Target:  5'- aGCGGGCcgaaGGCGgCGggcgCGCCGCcggggGGCg -3'
miRNA:   3'- gCGCCUG----CCGCaGCaga-GCGGCG-----CCG- -5'
5521 3' -62.4 NC_001798.1 + 39467 0.66 0.678278
Target:  5'- aGCGGAgggggggccUGGCG-CGUgcCUCgugGCCGCGGg -3'
miRNA:   3'- gCGCCU---------GCCGCaGCA--GAG---CGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 63179 0.66 0.678278
Target:  5'- aCGaCGGcccCGGCGUaCGaggUGCUGCGGCa -3'
miRNA:   3'- -GC-GCCu--GCCGCA-GCagaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 31543 0.66 0.685898
Target:  5'- cCGgGGGgGGaggucugccacaGUCGUCggggcgCGCCGCGcGCc -3'
miRNA:   3'- -GCgCCUgCCg-----------CAGCAGa-----GCGGCGC-CG- -5'
5521 3' -62.4 NC_001798.1 + 65394 0.66 0.686849
Target:  5'- -cUGGAUGGgGaUCGUUUCGCCGaaccccaUGGCc -3'
miRNA:   3'- gcGCCUGCCgC-AGCAGAGCGGC-------GCCG- -5'
5521 3' -62.4 NC_001798.1 + 154154 0.66 0.6878
Target:  5'- gGCGGGCGGC-UgGgCUCGgCGUaGGCc -3'
miRNA:   3'- gCGCCUGCCGcAgCaGAGCgGCG-CCG- -5'
5521 3' -62.4 NC_001798.1 + 4104 0.66 0.6878
Target:  5'- gGCGGGCucggcccugGGCGgg--CUCgGCCGgGGCg -3'
miRNA:   3'- gCGCCUG---------CCGCagcaGAG-CGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 4364 0.66 0.6878
Target:  5'- gGCGGGgGGCG-CGcCg-GCgGCGGUg -3'
miRNA:   3'- gCGCCUgCCGCaGCaGagCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 36305 0.66 0.6878
Target:  5'- gGUGuGGCGGCGgggCG-CggGCCGgGGCc -3'
miRNA:   3'- gCGC-CUGCCGCa--GCaGagCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 131158 0.66 0.6878
Target:  5'- gGgGGACGGCuacacccccgCGcacCUCGaCCGUGGCg -3'
miRNA:   3'- gCgCCUGCCGca--------GCa--GAGC-GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 92928 0.67 0.630313
Target:  5'- -uCGaGGCGGuCGUCGggcccgC-CGCCGUGGCc -3'
miRNA:   3'- gcGC-CUGCC-GCAGCa-----GaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 35535 0.67 0.630313
Target:  5'- cCGCGGcCGGCG-CGgggCgUUGCCGgccCGGCc -3'
miRNA:   3'- -GCGCCuGCCGCaGCa--G-AGCGGC---GCCG- -5'
5521 3' -62.4 NC_001798.1 + 92335 0.67 0.630313
Target:  5'- aCGCGGACGuCGcCGUCgCGCCccucaucguCGGCc -3'
miRNA:   3'- -GCGCCUGCcGCaGCAGaGCGGc--------GCCG- -5'
5521 3' -62.4 NC_001798.1 + 108859 0.67 0.630313
Target:  5'- gGCGGGCuGGCGuUCGggugCgaCGCCGCGcucguGCg -3'
miRNA:   3'- gCGCCUG-CCGC-AGCa---Ga-GCGGCGC-----CG- -5'
5521 3' -62.4 NC_001798.1 + 2855 0.67 0.63993
Target:  5'- gGCGGccACGGCGgccUCG-CU-GCCGcCGGCc -3'
miRNA:   3'- gCGCC--UGCCGC---AGCaGAgCGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 25713 0.67 0.630313
Target:  5'- gGCGGGCaacuggaccGGCGcccccgaCGUCUCGgCGCugGGCg -3'
miRNA:   3'- gCGCCUG---------CCGCa------GCAGAGCgGCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.