miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 31543 0.66 0.685898
Target:  5'- cCGgGGGgGGaggucugccacaGUCGUCggggcgCGCCGCGcGCc -3'
miRNA:   3'- -GCgCCUgCCg-----------CAGCAGa-----GCGGCGC-CG- -5'
5521 3' -62.4 NC_001798.1 + 63179 0.66 0.678278
Target:  5'- aCGaCGGcccCGGCGUaCGaggUGCUGCGGCa -3'
miRNA:   3'- -GC-GCCu--GCCGCA-GCagaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 39467 0.66 0.678278
Target:  5'- aGCGGAgggggggccUGGCG-CGUgcCUCgugGCCGCGGg -3'
miRNA:   3'- gCGCCU---------GCCGCaGCA--GAG---CGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 2238 0.66 0.678278
Target:  5'- aGCGGGCcgaaGGCGgCGggcgCGCCGCcggggGGCg -3'
miRNA:   3'- gCGCCUG----CCGCaGCaga-GCGGCG-----CCG- -5'
5521 3' -62.4 NC_001798.1 + 124341 0.66 0.677324
Target:  5'- gCGCGGAaaGCGUCaUC-CGCCcgaccagcgccggGUGGCg -3'
miRNA:   3'- -GCGCCUgcCGCAGcAGaGCGG-------------CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 85288 0.66 0.668724
Target:  5'- gGgGGGCGGgGgccgggGUC-CGCCcGCGGCc -3'
miRNA:   3'- gCgCCUGCCgCag----CAGaGCGG-CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 45293 0.66 0.668724
Target:  5'- gGCGGACGuGC-UCGUCUC-CCa-GGCc -3'
miRNA:   3'- gCGCCUGC-CGcAGCAGAGcGGcgCCG- -5'
5521 3' -62.4 NC_001798.1 + 60315 0.66 0.668724
Target:  5'- aCGUGGugGGUuuggCgGUCUCGuccCCGaCGGCg -3'
miRNA:   3'- -GCGCCugCCGca--G-CAGAGC---GGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 60825 0.66 0.668724
Target:  5'- gGCaGGGCGGCcaGUcuucCGUC-CGCucgCGCGGCg -3'
miRNA:   3'- gCG-CCUGCCG--CA----GCAGaGCG---GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 150833 0.66 0.668724
Target:  5'- cCGCGGggcgccagGgGGCGcCgGUCggGUCGCGGCg -3'
miRNA:   3'- -GCGCC--------UgCCGCaG-CAGagCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 4499 0.66 0.668724
Target:  5'- aGCGGcccgcgucGCGGuCGUCGUCaUCGUCGUcGUc -3'
miRNA:   3'- gCGCC--------UGCC-GCAGCAG-AGCGGCGcCG- -5'
5521 3' -62.4 NC_001798.1 + 3164 0.66 0.667766
Target:  5'- cCGCcGGCGcCGUCGUCgucgucgUCGUCGuCGGCc -3'
miRNA:   3'- -GCGcCUGCcGCAGCAG-------AGCGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 83377 0.66 0.662019
Target:  5'- uGCGGGgcgaacguguuguUGGCGugggucaccccgaggUcCGUCagCGCCGCGGCc -3'
miRNA:   3'- gCGCCU-------------GCCGC---------------A-GCAGa-GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 95007 0.66 0.659142
Target:  5'- cCGCaGGGCGGCG-CGggcCUggagGCCGgGGCc -3'
miRNA:   3'- -GCG-CCUGCCGCaGCa--GAg---CGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 66964 0.66 0.659142
Target:  5'- cCGCGaGuCGGagucgcugucauCGUCGUCagUCGCCccuGCGGCc -3'
miRNA:   3'- -GCGC-CuGCC------------GCAGCAG--AGCGG---CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 95662 0.66 0.659142
Target:  5'- aCGCGGcgucguuCGGCG--GUUUgGCgGCGGCg -3'
miRNA:   3'- -GCGCCu------GCCGCagCAGAgCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 80688 0.66 0.659142
Target:  5'- cCGCGGugcuccuCGGCG-CGcC-CGUCGUGGUg -3'
miRNA:   3'- -GCGCCu------GCCGCaGCaGaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 150196 0.66 0.659142
Target:  5'- gCGUGGGgGGCGgcaccgggggUGUUggUGCCGCGGg -3'
miRNA:   3'- -GCGCCUgCCGCa---------GCAGa-GCGGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 59686 0.66 0.659142
Target:  5'- uGgGGGCGGCGggcacgccCGUCUucgggCGCUugGUGGCg -3'
miRNA:   3'- gCgCCUGCCGCa-------GCAGA-----GCGG--CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 31255 0.66 0.654344
Target:  5'- uGCGGGCGGgGgugggaucuggGUCUgggggcggcccugcCGUCGCGGCc -3'
miRNA:   3'- gCGCCUGCCgCag---------CAGA--------------GCGGCGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.