Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5521 | 3' | -62.4 | NC_001798.1 | + | 31543 | 0.66 | 0.685898 |
Target: 5'- cCGgGGGgGGaggucugccacaGUCGUCggggcgCGCCGCGcGCc -3' miRNA: 3'- -GCgCCUgCCg-----------CAGCAGa-----GCGGCGC-CG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 63179 | 0.66 | 0.678278 |
Target: 5'- aCGaCGGcccCGGCGUaCGaggUGCUGCGGCa -3' miRNA: 3'- -GC-GCCu--GCCGCA-GCagaGCGGCGCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 39467 | 0.66 | 0.678278 |
Target: 5'- aGCGGAgggggggccUGGCG-CGUgcCUCgugGCCGCGGg -3' miRNA: 3'- gCGCCU---------GCCGCaGCA--GAG---CGGCGCCg -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 2238 | 0.66 | 0.678278 |
Target: 5'- aGCGGGCcgaaGGCGgCGggcgCGCCGCcggggGGCg -3' miRNA: 3'- gCGCCUG----CCGCaGCaga-GCGGCG-----CCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 124341 | 0.66 | 0.677324 |
Target: 5'- gCGCGGAaaGCGUCaUC-CGCCcgaccagcgccggGUGGCg -3' miRNA: 3'- -GCGCCUgcCGCAGcAGaGCGG-------------CGCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 85288 | 0.66 | 0.668724 |
Target: 5'- gGgGGGCGGgGgccgggGUC-CGCCcGCGGCc -3' miRNA: 3'- gCgCCUGCCgCag----CAGaGCGG-CGCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 45293 | 0.66 | 0.668724 |
Target: 5'- gGCGGACGuGC-UCGUCUC-CCa-GGCc -3' miRNA: 3'- gCGCCUGC-CGcAGCAGAGcGGcgCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 60315 | 0.66 | 0.668724 |
Target: 5'- aCGUGGugGGUuuggCgGUCUCGuccCCGaCGGCg -3' miRNA: 3'- -GCGCCugCCGca--G-CAGAGC---GGC-GCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 60825 | 0.66 | 0.668724 |
Target: 5'- gGCaGGGCGGCcaGUcuucCGUC-CGCucgCGCGGCg -3' miRNA: 3'- gCG-CCUGCCG--CA----GCAGaGCG---GCGCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 150833 | 0.66 | 0.668724 |
Target: 5'- cCGCGGggcgccagGgGGCGcCgGUCggGUCGCGGCg -3' miRNA: 3'- -GCGCC--------UgCCGCaG-CAGagCGGCGCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 4499 | 0.66 | 0.668724 |
Target: 5'- aGCGGcccgcgucGCGGuCGUCGUCaUCGUCGUcGUc -3' miRNA: 3'- gCGCC--------UGCC-GCAGCAG-AGCGGCGcCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 3164 | 0.66 | 0.667766 |
Target: 5'- cCGCcGGCGcCGUCGUCgucgucgUCGUCGuCGGCc -3' miRNA: 3'- -GCGcCUGCcGCAGCAG-------AGCGGC-GCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 83377 | 0.66 | 0.662019 |
Target: 5'- uGCGGGgcgaacguguuguUGGCGugggucaccccgaggUcCGUCagCGCCGCGGCc -3' miRNA: 3'- gCGCCU-------------GCCGC---------------A-GCAGa-GCGGCGCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 95007 | 0.66 | 0.659142 |
Target: 5'- cCGCaGGGCGGCG-CGggcCUggagGCCGgGGCc -3' miRNA: 3'- -GCG-CCUGCCGCaGCa--GAg---CGGCgCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 66964 | 0.66 | 0.659142 |
Target: 5'- cCGCGaGuCGGagucgcugucauCGUCGUCagUCGCCccuGCGGCc -3' miRNA: 3'- -GCGC-CuGCC------------GCAGCAG--AGCGG---CGCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 95662 | 0.66 | 0.659142 |
Target: 5'- aCGCGGcgucguuCGGCG--GUUUgGCgGCGGCg -3' miRNA: 3'- -GCGCCu------GCCGCagCAGAgCGgCGCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 80688 | 0.66 | 0.659142 |
Target: 5'- cCGCGGugcuccuCGGCG-CGcC-CGUCGUGGUg -3' miRNA: 3'- -GCGCCu------GCCGCaGCaGaGCGGCGCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 150196 | 0.66 | 0.659142 |
Target: 5'- gCGUGGGgGGCGgcaccgggggUGUUggUGCCGCGGg -3' miRNA: 3'- -GCGCCUgCCGCa---------GCAGa-GCGGCGCCg -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 59686 | 0.66 | 0.659142 |
Target: 5'- uGgGGGCGGCGggcacgccCGUCUucgggCGCUugGUGGCg -3' miRNA: 3'- gCgCCUGCCGCa-------GCAGA-----GCGG--CGCCG- -5' |
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5521 | 3' | -62.4 | NC_001798.1 | + | 31255 | 0.66 | 0.654344 |
Target: 5'- uGCGGGCGGgGgugggaucuggGUCUgggggcggcccugcCGUCGCGGCc -3' miRNA: 3'- gCGCCUGCCgCag---------CAGA--------------GCGGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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