miRNA display CGI


Results 41 - 60 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 36544 0.66 0.649542
Target:  5'- gCGCGcGGCGGCcgggCGggggCgCGCgGCGGCc -3'
miRNA:   3'- -GCGC-CUGCCGca--GCa---GaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 1255 0.66 0.649542
Target:  5'- gGCGGGCccgcguccGCGUCGUCgCGCagcaccaGCGGg -3'
miRNA:   3'- gCGCCUGc-------CGCAGCAGaGCGg------CGCCg -5'
5521 3' -62.4 NC_001798.1 + 98494 0.66 0.649542
Target:  5'- aGCGGGCGGCGggagCGaCgCGCCcccguaGGCc -3'
miRNA:   3'- gCGCCUGCCGCa---GCaGaGCGGcg----CCG- -5'
5521 3' -62.4 NC_001798.1 + 89582 0.66 0.649542
Target:  5'- gCGCGcGACGGCGgaaagCUCcaGgUGCGGCa -3'
miRNA:   3'- -GCGC-CUGCCGCagca-GAG--CgGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 75258 0.66 0.649542
Target:  5'- uGUGGccgccACGGCGgucCGgCUCGCgGCGcGCg -3'
miRNA:   3'- gCGCC-----UGCCGCa--GCaGAGCGgCGC-CG- -5'
5521 3' -62.4 NC_001798.1 + 36586 0.66 0.649542
Target:  5'- gCGCGcGGCGGCcgggCGggggCgCGCgGCGGCc -3'
miRNA:   3'- -GCGC-CUGCCGca--GCa---GaGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 40001 0.66 0.649542
Target:  5'- uGuCGGAcuCGGgGUCG--UCGCgGCGGCc -3'
miRNA:   3'- gC-GCCU--GCCgCAGCagAGCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 48125 0.66 0.649542
Target:  5'- gGUGGcCGgguucaacaagcGCGUCuUCUgCGCCGCGGUc -3'
miRNA:   3'- gCGCCuGC------------CGCAGcAGA-GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 95534 0.66 0.649542
Target:  5'- gCGCGGGCauGGCGagUgGUCgacCGaCGCGGCc -3'
miRNA:   3'- -GCGCCUG--CCGC--AgCAGa--GCgGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 149993 0.66 0.649542
Target:  5'- cCGCGGACgccggGGCGagCGgcccgUgGCCGCGGUc -3'
miRNA:   3'- -GCGCCUG-----CCGCa-GCag---AgCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 86110 0.66 0.649542
Target:  5'- cCGCGGAC-GCc-CGcCgCGCCGCGGUc -3'
miRNA:   3'- -GCGCCUGcCGcaGCaGaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 15554 0.66 0.649542
Target:  5'- -cCGGccccgGGCGUUGcCgcCGCCGCGGCg -3'
miRNA:   3'- gcGCCug---CCGCAGCaGa-GCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 153036 0.66 0.648582
Target:  5'- cCGCGcGGCGGCGcgCGguuggCcggCGCCGCccccuggGGCg -3'
miRNA:   3'- -GCGC-CUGCCGCa-GCa----Ga--GCGGCG-------CCG- -5'
5521 3' -62.4 NC_001798.1 + 57287 0.66 0.645699
Target:  5'- gGCGccguuccgaucuCGGCGUCcg-UCGCCGUGGCa -3'
miRNA:   3'- gCGCcu----------GCCGCAGcagAGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 54057 0.67 0.63993
Target:  5'- uCGUGGACGcCaUCGUCUCGaCCGUcgaGGUu -3'
miRNA:   3'- -GCGCCUGCcGcAGCAGAGC-GGCG---CCG- -5'
5521 3' -62.4 NC_001798.1 + 2855 0.67 0.63993
Target:  5'- gGCGGccACGGCGgccUCG-CU-GCCGcCGGCc -3'
miRNA:   3'- gCGCC--UGCCGC---AGCaGAgCGGC-GCCG- -5'
5521 3' -62.4 NC_001798.1 + 92335 0.67 0.630313
Target:  5'- aCGCGGACGuCGcCGUCgCGCCccucaucguCGGCc -3'
miRNA:   3'- -GCGCCUGCcGCaGCAGaGCGGc--------GCCG- -5'
5521 3' -62.4 NC_001798.1 + 35535 0.67 0.630313
Target:  5'- cCGCGGcCGGCG-CGgggCgUUGCCGgccCGGCc -3'
miRNA:   3'- -GCGCCuGCCGCaGCa--G-AGCGGC---GCCG- -5'
5521 3' -62.4 NC_001798.1 + 92928 0.67 0.630313
Target:  5'- -uCGaGGCGGuCGUCGggcccgC-CGCCGUGGCc -3'
miRNA:   3'- gcGC-CUGCC-GCAGCa-----GaGCGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 25713 0.67 0.630313
Target:  5'- gGCGGGCaacuggaccGGCGcccccgaCGUCUCGgCGCugGGCg -3'
miRNA:   3'- gCGCCUG---------CCGCa------GCAGAGCgGCG--CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.