miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 3' -62.1 NC_001798.1 + 39490 0.66 0.619715
Target:  5'- gCCUcg-UgGCCGCGGGCCCCCggagaCGUc -3'
miRNA:   3'- -GGAagaGgCGGCGCCUGGGGGag---GUA- -5'
5522 3' -62.1 NC_001798.1 + 47899 0.69 0.468184
Target:  5'- ---cCUCC-CCGCGGACCCCCa---- -3'
miRNA:   3'- ggaaGAGGcGGCGCCUGGGGGaggua -5'
5522 3' -62.1 NC_001798.1 + 47991 0.66 0.668624
Target:  5'- gCCgaCUCCGCCGUGcuccuagacGCCCCCgcucCCAc -3'
miRNA:   3'- -GGaaGAGGCGGCGCc--------UGGGGGa---GGUa -5'
5522 3' -62.1 NC_001798.1 + 48101 0.67 0.609931
Target:  5'- cCCcaCggCGCCGUGGACCCCCcggguggCCGg -3'
miRNA:   3'- -GGaaGagGCGGCGCCUGGGGGa------GGUa -5'
5522 3' -62.1 NC_001798.1 + 48147 0.66 0.678354
Target:  5'- gUCUUCUgCGCCGCGGucggGCgCCUggcggCCAc -3'
miRNA:   3'- -GGAAGAgGCGGCGCC----UGgGGGa----GGUa -5'
5522 3' -62.1 NC_001798.1 + 48825 0.7 0.439173
Target:  5'- cCUUUUUCUGUCGCGGGucccggaucccuccCCCCCUCUc- -3'
miRNA:   3'- -GGAAGAGGCGGCGCCU--------------GGGGGAGGua -5'
5522 3' -62.1 NC_001798.1 + 56574 0.72 0.316655
Target:  5'- aCCUUCUCCGCCGgcgaGGAgucguCCCCCaggaaCCAg -3'
miRNA:   3'- -GGAAGAGGCGGCg---CCU-----GGGGGa----GGUa -5'
5522 3' -62.1 NC_001798.1 + 58331 0.68 0.505541
Target:  5'- cCCg---CCGCCGCGuGGCCCCCgacaaacaccuggggCCAc -3'
miRNA:   3'- -GGaagaGGCGGCGC-CUGGGGGa--------------GGUa -5'
5522 3' -62.1 NC_001798.1 + 59819 0.69 0.477168
Target:  5'- gCCUUCUUcuucuggggCGCCGCGGucGCCCgCgUCCGg -3'
miRNA:   3'- -GGAAGAG---------GCGGCGCC--UGGG-GgAGGUa -5'
5522 3' -62.1 NC_001798.1 + 61804 0.68 0.513915
Target:  5'- gCCUUUUCCaacaugcgccGCCGCGGGCaCgCCUUCGc -3'
miRNA:   3'- -GGAAGAGG----------CGGCGCCUG-GgGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 73233 0.67 0.590415
Target:  5'- gCCUUCcgCCGgcCCGgGGGCCCCCggggaCCu- -3'
miRNA:   3'- -GGAAGa-GGC--GGCgCCUGGGGGa----GGua -5'
5522 3' -62.1 NC_001798.1 + 74418 0.68 0.542214
Target:  5'- aCCUga-CCGCCGCGG-CCCugcaCCUCUAc -3'
miRNA:   3'- -GGAagaGGCGGCGCCuGGG----GGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 76317 0.67 0.580696
Target:  5'- gCCaUC-CUGCUGCgGGACCUgCUCCAg -3'
miRNA:   3'- -GGaAGaGGCGGCG-CCUGGGgGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 79975 0.72 0.316655
Target:  5'- gCCgcgUCCGCCGcCGGGCCCCCgggggucCCAg -3'
miRNA:   3'- -GGaagAGGCGGC-GCCUGGGGGa------GGUa -5'
5522 3' -62.1 NC_001798.1 + 80676 0.68 0.532719
Target:  5'- aCCUggUUCUgGCCGCGGugCUCCUCgGc -3'
miRNA:   3'- -GGAa-GAGG-CGGCGCCugGGGGAGgUa -5'
5522 3' -62.1 NC_001798.1 + 80939 0.7 0.407904
Target:  5'- gCCcUCU-CGCCGaCGGGCCCCCgugCCu- -3'
miRNA:   3'- -GGaAGAgGCGGC-GCCUGGGGGa--GGua -5'
5522 3' -62.1 NC_001798.1 + 81130 0.71 0.367934
Target:  5'- cCCUUCUUCG-CGCGGGCCaUCCUCgGg -3'
miRNA:   3'- -GGAAGAGGCgGCGCCUGG-GGGAGgUa -5'
5522 3' -62.1 NC_001798.1 + 84198 0.66 0.629507
Target:  5'- gUCUgCUCCGCCGUGaucgcGCCCCCcggggcgCCGUg -3'
miRNA:   3'- -GGAaGAGGCGGCGCc----UGGGGGa------GGUA- -5'
5522 3' -62.1 NC_001798.1 + 86095 0.71 0.383596
Target:  5'- cCCggcugCgcgCCGCCGCGGACgCCCgCCGc -3'
miRNA:   3'- -GGaa---Ga--GGCGGCGCCUGgGGGaGGUa -5'
5522 3' -62.1 NC_001798.1 + 86473 0.7 0.416218
Target:  5'- gCCUgCUUCggGCCGCGGGCCCCgaggCCAUc -3'
miRNA:   3'- -GGAaGAGG--CGGCGCCUGGGGga--GGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.