miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 3' -62.1 NC_001798.1 + 137 0.7 0.424634
Target:  5'- gCCggccgCUCCcCCGCGGGCgccgCCCCUCCc- -3'
miRNA:   3'- -GGaa---GAGGcGGCGCCUG----GGGGAGGua -5'
5522 3' -62.1 NC_001798.1 + 466 0.66 0.649091
Target:  5'- gCCgcCUCCcCCGCGG-CCgCCUCCc- -3'
miRNA:   3'- -GGaaGAGGcGGCGCCuGGgGGAGGua -5'
5522 3' -62.1 NC_001798.1 + 3821 0.74 0.253047
Target:  5'- gCCUcCUCCGCCuCGGGCgCCCC-CCAg -3'
miRNA:   3'- -GGAaGAGGCGGcGCCUG-GGGGaGGUa -5'
5522 3' -62.1 NC_001798.1 + 4914 0.74 0.258905
Target:  5'- gCCggucgUCUCCGCCGCGGcccggagacguCCCCCgUCCu- -3'
miRNA:   3'- -GGa----AGAGGCGGCGCCu----------GGGGG-AGGua -5'
5522 3' -62.1 NC_001798.1 + 7170 0.67 0.580696
Target:  5'- ---cUUCCGaCCGaCGGGCCCCCgcaCCGg -3'
miRNA:   3'- ggaaGAGGC-GGC-GCCUGGGGGa--GGUa -5'
5522 3' -62.1 NC_001798.1 + 16446 0.67 0.561365
Target:  5'- --cUCgCCGCCGC-GACaCCCUCCAUa -3'
miRNA:   3'- ggaAGaGGCGGCGcCUGgGGGAGGUA- -5'
5522 3' -62.1 NC_001798.1 + 20005 0.72 0.316655
Target:  5'- -gUUCUCCcggccgGCCGgGGAgggccCCCCCUCCGUg -3'
miRNA:   3'- ggAAGAGG------CGGCgCCU-----GGGGGAGGUA- -5'
5522 3' -62.1 NC_001798.1 + 21660 0.66 0.619715
Target:  5'- gCCggcgUCUCugucuCGCUGUGG-CCCCCUUCGc -3'
miRNA:   3'- -GGa---AGAG-----GCGGCGCCuGGGGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 21711 0.68 0.513915
Target:  5'- cCCggUCUCCGCCGCGcagccgguGugCCCCUg--- -3'
miRNA:   3'- -GGa-AGAGGCGGCGC--------CugGGGGAggua -5'
5522 3' -62.1 NC_001798.1 + 23126 1.07 0.001178
Target:  5'- gCCUUCUCCGCCGCGGACCCCCUCCAUg -3'
miRNA:   3'- -GGAAGAGGCGGCGCCUGGGGGAGGUA- -5'
5522 3' -62.1 NC_001798.1 + 24947 0.73 0.289858
Target:  5'- gCCgcg-CCGCCGCGGACCUgcuCUUCCAg -3'
miRNA:   3'- -GGaagaGGCGGCGCCUGGG---GGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 28232 0.67 0.609931
Target:  5'- gCCUg--CCGCCGCcuGCCCCCcgCCGc -3'
miRNA:   3'- -GGAagaGGCGGCGccUGGGGGa-GGUa -5'
5522 3' -62.1 NC_001798.1 + 28810 0.7 0.416218
Target:  5'- uCCUcCgCCGCCGCGGGCCCgggCCGUc -3'
miRNA:   3'- -GGAaGaGGCGGCGCCUGGGggaGGUA- -5'
5522 3' -62.1 NC_001798.1 + 29008 0.66 0.619715
Target:  5'- aCCgcgCgCCGCCgcGCGGGCCCggaCUCCGc -3'
miRNA:   3'- -GGaa-GaGGCGG--CGCCUGGGg--GAGGUa -5'
5522 3' -62.1 NC_001798.1 + 29813 0.68 0.551764
Target:  5'- cCCgagCggCCGCCGCGGcagACCCCCggCAc -3'
miRNA:   3'- -GGaa-Ga-GGCGGCGCC---UGGGGGagGUa -5'
5522 3' -62.1 NC_001798.1 + 31466 0.7 0.423788
Target:  5'- gCCgUCUCCGCgccgcccCGCGGGCCCCgggCCGc -3'
miRNA:   3'- -GGaAGAGGCG-------GCGCCUGGGGga-GGUa -5'
5522 3' -62.1 NC_001798.1 + 32089 0.66 0.629507
Target:  5'- --gUCUCCgucgucccagGCCGCGGucgccgccGCCUCCUCCu- -3'
miRNA:   3'- ggaAGAGG----------CGGCGCC--------UGGGGGAGGua -5'
5522 3' -62.1 NC_001798.1 + 34823 0.7 0.407904
Target:  5'- cCCgcgCUCCGCCGgGGGCCCgggCCGg -3'
miRNA:   3'- -GGaa-GAGGCGGCgCCUGGGggaGGUa -5'
5522 3' -62.1 NC_001798.1 + 34868 0.66 0.675439
Target:  5'- gCCUUCcgcCCGgCGCcgggcggcuacccgGGACCCCCggCCGg -3'
miRNA:   3'- -GGAAGa--GGCgGCG--------------CCUGGGGGa-GGUa -5'
5522 3' -62.1 NC_001798.1 + 35171 0.66 0.66765
Target:  5'- uCCUUCUCCGgaguCCcucucgaucggcgGCGGGCCCCUgcgUUCGUu -3'
miRNA:   3'- -GGAAGAGGC----GG-------------CGCCUGGGGG---AGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.