miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 3' -62.1 NC_001798.1 + 154475 0.7 0.424634
Target:  5'- gCCggccgCUCCcCCGCGGGCgccgCCCCUCCc- -3'
miRNA:   3'- -GGaa---GAGGcGGCGCCUG----GGGGAGGua -5'
5522 3' -62.1 NC_001798.1 + 153173 0.66 0.678354
Target:  5'- uCCggggCUCCGCCGgcCGaGGCCgCCCUCg-- -3'
miRNA:   3'- -GGaa--GAGGCGGC--GC-CUGG-GGGAGgua -5'
5522 3' -62.1 NC_001798.1 + 147354 0.66 0.639302
Target:  5'- cCCgUC-CCGCCGC--GCCCCUUCCc- -3'
miRNA:   3'- -GGaAGaGGCGGCGccUGGGGGAGGua -5'
5522 3' -62.1 NC_001798.1 + 145601 0.72 0.337951
Target:  5'- uCCUUCcCCGCCGCGaccccGACCCCgCcCCAc -3'
miRNA:   3'- -GGAAGaGGCGGCGC-----CUGGGG-GaGGUa -5'
5522 3' -62.1 NC_001798.1 + 145504 0.68 0.523284
Target:  5'- cCCgg--CCGCCGCGcGCCCCCgcCCGg -3'
miRNA:   3'- -GGaagaGGCGGCGCcUGGGGGa-GGUa -5'
5522 3' -62.1 NC_001798.1 + 145462 0.68 0.523284
Target:  5'- cCCgg--CCGCCGCGcGCCCCCgcCCGg -3'
miRNA:   3'- -GGaagaGGCGGCGCcUGGGGGa-GGUa -5'
5522 3' -62.1 NC_001798.1 + 145420 0.68 0.523284
Target:  5'- cCCgg--CCGCCGCGcGCCCCCgcCCGg -3'
miRNA:   3'- -GGaagaGGCGGCGCcUGGGGGa-GGUa -5'
5522 3' -62.1 NC_001798.1 + 137911 0.69 0.486237
Target:  5'- uCCgcCUCCGCCGgGcGGCCCgcgCCUCCc- -3'
miRNA:   3'- -GGaaGAGGCGGCgC-CUGGG---GGAGGua -5'
5522 3' -62.1 NC_001798.1 + 134741 0.66 0.649091
Target:  5'- -gUUCUCCGCCcCGGcgcuggucGCCCuCUUCCGg -3'
miRNA:   3'- ggAAGAGGCGGcGCC--------UGGG-GGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 132138 0.66 0.662773
Target:  5'- cCCUgcgCCGCCGgGGgccggcgggcggggcGCCCCCcCCGg -3'
miRNA:   3'- -GGAagaGGCGGCgCC---------------UGGGGGaGGUa -5'
5522 3' -62.1 NC_001798.1 + 130030 0.75 0.210048
Target:  5'- aCCggCUCCcCCGCGGACcuuggcgcauaCCCCUCCAc -3'
miRNA:   3'- -GGaaGAGGcGGCGCCUG-----------GGGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 127689 0.69 0.468184
Target:  5'- --cUCUCUGUCGUgaGGAUCCCUUCCGc -3'
miRNA:   3'- ggaAGAGGCGGCG--CCUGGGGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 117447 0.71 0.383596
Target:  5'- ---cCUCgGCCGCgGGGCCCCC-CCGc -3'
miRNA:   3'- ggaaGAGgCGGCG-CCUGGGGGaGGUa -5'
5522 3' -62.1 NC_001798.1 + 113581 0.67 0.600162
Target:  5'- gCCagCUgCUGCCccgcaCGGAUCCCCUCCGc -3'
miRNA:   3'- -GGaaGA-GGCGGc----GCCUGGGGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 111477 0.66 0.655936
Target:  5'- gCCUgCUCCcggaacccaugcacGgCGCGGACCUCCUCgCGc -3'
miRNA:   3'- -GGAaGAGG--------------CgGCGCCUGGGGGAG-GUa -5'
5522 3' -62.1 NC_001798.1 + 105276 0.7 0.424634
Target:  5'- cUCUUCggccgcggCCGCCGCGGucuCCagcgCCUCCAg -3'
miRNA:   3'- -GGAAGa-------GGCGGCGCCu--GGg---GGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 105178 0.66 0.6657
Target:  5'- aCCUccaUCUCCGCggcggcggggccCGCGGugggcgacggcgcuGCCCCgUCCGc -3'
miRNA:   3'- -GGA---AGAGGCG------------GCGCC--------------UGGGGgAGGUa -5'
5522 3' -62.1 NC_001798.1 + 91088 0.66 0.658867
Target:  5'- gCCggaggCggCCGUCGUGGACCCCggugcgcugCUCCGc -3'
miRNA:   3'- -GGaa---Ga-GGCGGCGCCUGGGG---------GAGGUa -5'
5522 3' -62.1 NC_001798.1 + 87717 0.66 0.639302
Target:  5'- ---cCUCCGCCGUagcgccGGCCCCCgCCGg -3'
miRNA:   3'- ggaaGAGGCGGCGc-----CUGGGGGaGGUa -5'
5522 3' -62.1 NC_001798.1 + 86995 0.71 0.345278
Target:  5'- gCUUCUUCGCCGCccucgcccaGACgCCCUCCGa -3'
miRNA:   3'- gGAAGAGGCGGCGc--------CUGgGGGAGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.