miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 5' -54.7 NC_001806.1 + 149776 0.68 0.873475
Target:  5'- -----aUGGcgCCCGGCCCCUCa--- -3'
miRNA:   3'- caggaaACCuaGGGCUGGGGAGaaga -5'
5534 5' -54.7 NC_001806.1 + 21008 0.68 0.866009
Target:  5'- gGUCCg-UGGGUCUCGcCCCCUCc--- -3'
miRNA:   3'- -CAGGaaACCUAGGGCuGGGGAGaaga -5'
5534 5' -54.7 NC_001806.1 + 49673 0.69 0.808102
Target:  5'- uUCCcgUUGGAUCgaCUGGCCCCUCa--- -3'
miRNA:   3'- cAGGa-AACCUAG--GGCUGGGGAGaaga -5'
5534 5' -54.7 NC_001806.1 + 111484 0.7 0.799113
Target:  5'- -gCCUuuUUGGGUCCgGGCCCgUCgugUCUu -3'
miRNA:   3'- caGGA--AACCUAGGgCUGGGgAGa--AGA- -5'
5534 5' -54.7 NC_001806.1 + 32716 0.73 0.630287
Target:  5'- uGUCgUUUGGGUCCCc-CCCCUCUa-- -3'
miRNA:   3'- -CAGgAAACCUAGGGcuGGGGAGAaga -5'
5534 5' -54.7 NC_001806.1 + 67495 0.74 0.53815
Target:  5'- cUCCg--GGGUCCCGACCCC-CUg-- -3'
miRNA:   3'- cAGGaaaCCUAGGGCUGGGGaGAaga -5'
5534 5' -54.7 NC_001806.1 + 149195 1.07 0.004743
Target:  5'- cGUCCUUUGGAUCCCGACCCCUCUUCUu -3'
miRNA:   3'- -CAGGAAACCUAGGGCUGGGGAGAAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.