Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5536 | 3' | -57.3 | NC_001806.1 | + | 52584 | 0.71 | 0.578979 |
Target: 5'- --aGCgGCccgGGGGGGCAucgcGCGGGGGGUGg -3' miRNA: 3'- agaCGaCG---UUCUCUGU----UGCCCCCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 57821 | 0.7 | 0.609393 |
Target: 5'- aUCUGCggGCGGGGGu--GCGGuGGGCGa -3' miRNA: 3'- -AGACGa-CGUUCUCuguUGCCcCCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 83651 | 0.7 | 0.617537 |
Target: 5'- aCUGCUGCuuccguaccGACGGCGGGgugcccGGGCGg -3' miRNA: 3'- aGACGACGuucu-----CUGUUGCCC------CCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 33620 | 0.7 | 0.636899 |
Target: 5'- --cGCgggGCGGGGGGCcggauacccacacgGGCGGGGGGgGg -3' miRNA: 3'- agaCGa--CGUUCUCUG--------------UUGCCCCCCgC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 62833 | 0.7 | 0.639957 |
Target: 5'- aUCUGC-GCc-GAGGCGGCGGuGGGCa -3' miRNA: 3'- -AGACGaCGuuCUCUGUUGCCcCCCGc -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 25280 | 0.69 | 0.680583 |
Target: 5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3' miRNA: 3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 25314 | 0.69 | 0.680583 |
Target: 5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3' miRNA: 3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 25348 | 0.69 | 0.680583 |
Target: 5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3' miRNA: 3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 25382 | 0.69 | 0.680583 |
Target: 5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3' miRNA: 3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 62781 | 0.69 | 0.710667 |
Target: 5'- cUUGCUGaaCAGGuuGGugAACaGGGGGGCa -3' miRNA: 3'- aGACGAC--GUUC--UCugUUG-CCCCCCGc -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 25246 | 0.69 | 0.680583 |
Target: 5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3' miRNA: 3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 25212 | 0.69 | 0.680583 |
Target: 5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3' miRNA: 3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 25178 | 0.69 | 0.680583 |
Target: 5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3' miRNA: 3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 25144 | 0.69 | 0.680583 |
Target: 5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3' miRNA: 3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 25110 | 0.69 | 0.680583 |
Target: 5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3' miRNA: 3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 91021 | 0.69 | 0.680583 |
Target: 5'- --gGCgGCAAGGGcGCGGCGGGcGGGUu -3' miRNA: 3'- agaCGaCGUUCUC-UGUUGCCC-CCCGc -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 74957 | 0.69 | 0.660315 |
Target: 5'- --cGCUGCGGGcGGAC-AUGuGGGGGCu -3' miRNA: 3'- agaCGACGUUC-UCUGuUGC-CCCCCGc -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 33810 | 0.69 | 0.660315 |
Target: 5'- --gGCcgGCGGGuGGACucGCGGGGGGCc -3' miRNA: 3'- agaCGa-CGUUC-UCUGu-UGCCCCCCGc -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 34744 | 0.68 | 0.720574 |
Target: 5'- --gGUaGCAGGGGAuCAAaGGGGGGCa -3' miRNA: 3'- agaCGaCGUUCUCU-GUUgCCCCCCGc -5' |
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5536 | 3' | -57.3 | NC_001806.1 | + | 6451 | 0.68 | 0.730407 |
Target: 5'- --cGCggggGCGgaggAGGGGgGACGcGGGGGCGg -3' miRNA: 3'- agaCGa---CGU----UCUCUgUUGC-CCCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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