miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 3' -57.3 NC_001806.1 + 25314 0.69 0.680583
Target:  5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3'
miRNA:   3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 25348 0.69 0.680583
Target:  5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3'
miRNA:   3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 25382 0.69 0.680583
Target:  5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3'
miRNA:   3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 28200 0.67 0.805265
Target:  5'- gUCUGggGCGccauauugGGGGGCGccauauUGGGGGGCGc -3'
miRNA:   3'- -AGACgaCGU--------UCUCUGUu-----GCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 29001 0.72 0.538983
Target:  5'- cUCUGagGC-GGAGACcgaaGugGGGGGGCGg -3'
miRNA:   3'- -AGACgaCGuUCUCUG----UugCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 29106 0.73 0.471549
Target:  5'- gCUGCUggggccGCAGGGcGugGAUgGGGGGGCGg -3'
miRNA:   3'- aGACGA------CGUUCU-CugUUG-CCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 29179 0.66 0.844899
Target:  5'- --aGUUGCGGgggcgcccccccucGAGAgGACGGGGGGa- -3'
miRNA:   3'- agaCGACGUU--------------CUCUgUUGCCCCCCgc -5'
5536 3' -57.3 NC_001806.1 + 29954 0.68 0.749809
Target:  5'- --aGUcGCGAGccgcGGCGccGCGGGGGGCGu -3'
miRNA:   3'- agaCGaCGUUCu---CUGU--UGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 32084 0.65 0.868034
Target:  5'- -aUGCggUGCAgccagagaaucacaGGAGACGAgGGGauGGGCGu -3'
miRNA:   3'- agACG--ACGU--------------UCUCUGUUgCCC--CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 33620 0.7 0.636899
Target:  5'- --cGCgggGCGGGGGGCcggauacccacacgGGCGGGGGGgGg -3'
miRNA:   3'- agaCGa--CGUUCUCUG--------------UUGCCCCCCgC- -5'
5536 3' -57.3 NC_001806.1 + 33810 0.69 0.660315
Target:  5'- --gGCcgGCGGGuGGACucGCGGGGGGCc -3'
miRNA:   3'- agaCGa-CGUUC-UCUGu-UGCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 34289 0.68 0.767862
Target:  5'- --gGggGCGGGAuGggguuuaGCGGCGGGGGGCGg -3'
miRNA:   3'- agaCgaCGUUCU-C-------UGUUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 34465 0.67 0.796361
Target:  5'- --aGgaGgAGGAGAaGGCGGGGGGgGg -3'
miRNA:   3'- agaCgaCgUUCUCUgUUGCCCCCCgC- -5'
5536 3' -57.3 NC_001806.1 + 34744 0.68 0.720574
Target:  5'- --gGUaGCAGGGGAuCAAaGGGGGGCa -3'
miRNA:   3'- agaCGaCGUUCUCU-GUUgCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 34774 0.66 0.862043
Target:  5'- --gGCgggGCGguucgggGGGGGgGGgGGGGGGCGg -3'
miRNA:   3'- agaCGa--CGU-------UCUCUgUUgCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 36640 0.67 0.805265
Target:  5'- cCUGCcaggugGCGuuGAGGCAguaAgGGGGGGCc -3'
miRNA:   3'- aGACGa-----CGUu-CUCUGU---UgCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 45283 0.67 0.78731
Target:  5'- --aGCgGCGGGAGACGcgggcccgcGCGGGGagccgcccGGCGa -3'
miRNA:   3'- agaCGaCGUUCUCUGU---------UGCCCC--------CCGC- -5'
5536 3' -57.3 NC_001806.1 + 51086 0.72 0.49901
Target:  5'- aCUGCUGaUggGAGACGAgGGGgccgccgcccugcGGGCGc -3'
miRNA:   3'- aGACGAC-GuuCUCUGUUgCCC-------------CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 52584 0.71 0.578979
Target:  5'- --aGCgGCccgGGGGGGCAucgcGCGGGGGGUGg -3'
miRNA:   3'- agaCGaCG---UUCUCUGU----UGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 53097 0.67 0.78731
Target:  5'- --aGacgGUGAGcGAgGACGGGGGGCGu -3'
miRNA:   3'- agaCga-CGUUCuCUgUUGCCCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.