miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 3' -57.3 NC_001806.1 + 95283 0.68 0.768801
Target:  5'- -gUGCUggcgcGCAuGGGG--GCGGGGGGCGc -3'
miRNA:   3'- agACGA-----CGUuCUCUguUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 94796 0.68 0.740154
Target:  5'- -aUGCgcugGCcc-GGAC-GCGGGGGGCGa -3'
miRNA:   3'- agACGa---CGuucUCUGuUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 93698 0.72 0.509612
Target:  5'- -aUGCUGUGAGGGGu--UGGGGGGUGg -3'
miRNA:   3'- agACGACGUUCUCUguuGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 91021 0.69 0.680583
Target:  5'- --gGCgGCAAGGGcGCGGCGGGcGGGUu -3'
miRNA:   3'- agaCGaCGUUCUC-UGUUGCCC-CCCGc -5'
5536 3' -57.3 NC_001806.1 + 90510 0.66 0.847293
Target:  5'- --gGCccgGCGAccucaaacacGAGACGACGGGGgaGGCGc -3'
miRNA:   3'- agaCGa--CGUU----------CUCUGUUGCCCC--CCGC- -5'
5536 3' -57.3 NC_001806.1 + 83897 0.73 0.480934
Target:  5'- cCUGgaCUGCAcggAGGGuCGGCGcGGGGGCGg -3'
miRNA:   3'- aGAC--GACGU---UCUCuGUUGC-CCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 83651 0.7 0.617537
Target:  5'- aCUGCUGCuuccguaccGACGGCGGGgugcccGGGCGg -3'
miRNA:   3'- aGACGACGuucu-----CUGUUGCCC------CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 75546 0.68 0.744028
Target:  5'- cCUGUUGCAcgccgaAGGGACGGcCGGGgaccacucccccagcGGGCGc -3'
miRNA:   3'- aGACGACGU------UCUCUGUU-GCCC---------------CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 74957 0.69 0.660315
Target:  5'- --cGCUGCGGGcGGAC-AUGuGGGGGCu -3'
miRNA:   3'- agaCGACGUUC-UCUGuUGC-CCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 74892 0.65 0.868034
Target:  5'- cCUGCcgGCGGGcuggucGGACcuccccgaggccguuCGGGGGGCGc -3'
miRNA:   3'- aGACGa-CGUUC------UCUGuu-------------GCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 74747 0.66 0.862799
Target:  5'- -aUGCU-CGAGGGAgcGCGGGagcGGGCGa -3'
miRNA:   3'- agACGAcGUUCUCUguUGCCC---CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 69600 0.73 0.480934
Target:  5'- cUCUGCgagGCGGucGGCcuguCGGGGGGCGu -3'
miRNA:   3'- -AGACGa--CGUUcuCUGuu--GCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 67532 0.77 0.286255
Target:  5'- --cGCgGCGAGAGAU--CGGGGGGCGc -3'
miRNA:   3'- agaCGaCGUUCUCUGuuGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 62833 0.7 0.639957
Target:  5'- aUCUGC-GCc-GAGGCGGCGGuGGGCa -3'
miRNA:   3'- -AGACGaCGuuCUCUGUUGCCcCCCGc -5'
5536 3' -57.3 NC_001806.1 + 62781 0.69 0.710667
Target:  5'- cUUGCUGaaCAGGuuGGugAACaGGGGGGCa -3'
miRNA:   3'- aGACGAC--GUUC--UCugUUG-CCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 62275 0.66 0.831012
Target:  5'- --gGCaGCAGGGGAgAGCGuGGGacGGCGa -3'
miRNA:   3'- agaCGaCGUUCUCUgUUGC-CCC--CCGC- -5'
5536 3' -57.3 NC_001806.1 + 59323 0.67 0.805265
Target:  5'- cCUuuUGgAAGAGGCAaugaGCGGGGGGa- -3'
miRNA:   3'- aGAcgACgUUCUCUGU----UGCCCCCCgc -5'
5536 3' -57.3 NC_001806.1 + 57821 0.7 0.609393
Target:  5'- aUCUGCggGCGGGGGu--GCGGuGGGCGa -3'
miRNA:   3'- -AGACGa-CGUUCUCuguUGCCcCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 55581 0.67 0.814014
Target:  5'- gUUUGggGuCGGGgguGGACGugGGGGGGCu -3'
miRNA:   3'- -AGACgaC-GUUC---UCUGUugCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 55079 0.72 0.519332
Target:  5'- --gGCUG-GAGGGucagaGACGGGGGGCGg -3'
miRNA:   3'- agaCGACgUUCUCug---UUGCCCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.