miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 3' -57.3 NC_001806.1 + 151552 0.72 0.538983
Target:  5'- --gGCgGCcGGGGGCGGCGGGGGccGCGa -3'
miRNA:   3'- agaCGaCGuUCUCUGUUGCCCCC--CGC- -5'
5536 3' -57.3 NC_001806.1 + 151435 0.76 0.299839
Target:  5'- --gGCccaccgGCGGGGGGCGGCGGcGGGGCGg -3'
miRNA:   3'- agaCGa-----CGUUCUCUGUUGCC-CCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 151276 0.67 0.805265
Target:  5'- --gGCgGUggGGGcCGGggcCGGGGGGCGg -3'
miRNA:   3'- agaCGaCGuuCUCuGUU---GCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 151104 0.66 0.831012
Target:  5'- --gGUcGCGGGGGuc-GCGGGGGGCu -3'
miRNA:   3'- agaCGaCGUUCUCuguUGCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 148224 1.08 0.002299
Target:  5'- gUCUGCUGCAAGAGACAACGGGGGGCGc -3'
miRNA:   3'- -AGACGACGUUCUCUGUUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 148175 0.79 0.220135
Target:  5'- cUCUGCguggggggGCGcGGGGCGuccgGCGGGGGGCGg -3'
miRNA:   3'- -AGACGa-------CGUuCUCUGU----UGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 148131 0.79 0.199526
Target:  5'- --gGCUGCGuGAGACGccccgcccgucACGGGGGGCGc -3'
miRNA:   3'- agaCGACGUuCUCUGU-----------UGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 148068 0.68 0.720574
Target:  5'- aCUGCUGCcguguggcccGAuGGGCGccgaGGGGGGCGc -3'
miRNA:   3'- aGACGACG----------UUcUCUGUug--CCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 147875 0.66 0.855146
Target:  5'- cUCUGUUGUuu---GCAA-GGGGGGCGg -3'
miRNA:   3'- -AGACGACGuucucUGUUgCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 147774 0.77 0.292986
Target:  5'- --cGCggacGCGGGGGGCccggGGCGGGGGGCGg -3'
miRNA:   3'- agaCGa---CGUUCUCUG----UUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 147465 0.72 0.538983
Target:  5'- cCUGCU-CGacAGAGGCGGCGGaggggagcGGGGCGg -3'
miRNA:   3'- aGACGAcGU--UCUCUGUUGCC--------CCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 143126 0.67 0.77812
Target:  5'- gCUGCcGgGAGGGGCcGCGGauGGGCGg -3'
miRNA:   3'- aGACGaCgUUCUCUGuUGCCc-CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 140428 0.68 0.759361
Target:  5'- --gGCaGUGAGGGugGCAugGGGGGGgGg -3'
miRNA:   3'- agaCGaCGUUCUC--UGUugCCCCCCgC- -5'
5536 3' -57.3 NC_001806.1 + 139101 0.72 0.529124
Target:  5'- --gGCUGCGAGAugcugaccGGCucgccgcGCGGGGGGCu -3'
miRNA:   3'- agaCGACGUUCU--------CUGu------UGCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 134614 0.66 0.855146
Target:  5'- --cGgUGCAGcAGaACGAgGGGGGGCa -3'
miRNA:   3'- agaCgACGUUcUC-UGUUgCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 134301 0.68 0.730407
Target:  5'- --gGC--CGAGAGA--ACGGGGGGCGg -3'
miRNA:   3'- agaCGacGUUCUCUguUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 133827 0.67 0.822599
Target:  5'- -gUGCUgGCGGGAGuaugggGCGAgGGGGGGa- -3'
miRNA:   3'- agACGA-CGUUCUC------UGUUgCCCCCCgc -5'
5536 3' -57.3 NC_001806.1 + 133138 0.72 0.490409
Target:  5'- uUCgcgGuCUGCGGG-GGCGAUGGGGGuGCGu -3'
miRNA:   3'- -AGa--C-GACGUUCuCUGUUGCCCCC-CGC- -5'
5536 3' -57.3 NC_001806.1 + 121799 0.66 0.831012
Target:  5'- --cGuCUGCAAGAGGuCGuCGGGGGaCGg -3'
miRNA:   3'- agaC-GACGUUCUCU-GUuGCCCCCcGC- -5'
5536 3' -57.3 NC_001806.1 + 113965 0.66 0.84168
Target:  5'- gCUGCUGCAcaacacccaggcccgAGccgcggacgccgcGGAUGAccggccgcacCGGGGGGCGg -3'
miRNA:   3'- aGACGACGU---------------UC-------------UCUGUU----------GCCCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.